Wall clock time and date at job start Mon Mar 30 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.52992 * 109.47321 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47257 * 174.99983 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 N 1.46903 * 109.47018 * 119.99605 * 2 1 3 14 14 C 1.46893 * 111.00409 * 275.00115 * 13 2 1 15 15 H 1.09006 * 112.84696 * 26.68917 * 14 13 2 16 16 C 1.53776 * 113.61490 * 255.49552 * 14 13 2 17 17 C 1.53779 * 87.07986 * 220.01610 * 16 14 13 18 18 H 1.09007 * 113.61643 * 270.79709 * 17 16 14 19 19 C 1.53003 * 113.61267 * 139.98115 * 17 16 14 20 20 C 1.53778 * 87.08229 * 25.43250 * 17 16 14 21 21 H 1.08995 * 113.61264 * 89.11425 * 20 17 16 22 22 C 1.52995 * 113.61576 * 220.01599 * 20 17 16 23 23 H 1.08998 * 109.47150 * 300.00526 * 1 2 3 24 24 H 1.09007 * 109.46968 * 59.99854 * 1 2 3 25 25 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 27 27 H 1.08997 * 109.47279 * 295.00493 * 4 2 1 28 28 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99744 * 38.95700 * 13 2 1 30 30 H 1.08992 * 113.61791 * 334.56753 * 16 14 13 31 31 H 1.09008 * 113.61279 * 105.47004 * 16 14 13 32 32 H 1.09001 * 109.47203 * 79.50679 * 19 17 16 33 33 H 1.08997 * 109.47142 * 199.50689 * 19 17 16 34 34 H 1.08994 * 109.47005 * 319.50533 * 19 17 16 35 35 H 1.08999 * 109.47461 * 157.49573 * 22 20 17 36 36 H 1.08999 * 109.47706 * 277.49858 * 22 20 17 37 37 H 1.09002 * 109.47062 * 37.50042 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3583 8 7 3.5769 -1.8412 -3.2973 9 14 6.0922 -1.0614 -2.4365 10 1 6.6839 -1.6884 -1.2274 11 1 6.5872 -1.7614 -3.6490 12 1 6.4856 0.3694 -2.4951 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2226 2.3469 15 1 1.3711 1.0451 2.2718 16 6 3.5102 0.6732 2.6981 17 6 3.1082 0.5281 4.1753 18 1 2.6784 1.4344 4.6019 19 6 4.2054 -0.0788 5.0522 20 6 2.0579 -0.4932 3.7077 21 1 2.4309 -1.5166 3.6695 22 6 0.7193 -0.3741 4.4389 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6055 -0.2618 -2.1369 27 1 1.7517 -1.7715 -1.2055 28 1 4.0612 -2.2473 -4.0331 29 1 1.4496 -1.4979 1.4101 30 1 4.2801 -0.0313 2.3838 31 1 3.7289 1.6998 2.4039 32 1 4.9386 0.6887 5.3001 33 1 3.7635 -0.4688 5.9691 34 1 4.6956 -0.8887 4.5122 35 1 -0.0693 -0.8119 3.8269 36 1 0.7766 -0.9028 5.3904 37 1 0.4967 0.6774 4.6204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709982131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:19 Heat of formation + Delta-G solvation = -23.720834 kcal Electronic energy + Delta-G solvation = -14498.395748 eV Core-core repulsion = 12274.480121 eV Total energy + Delta-G solvation = -2223.915627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.53817 -37.31346 -34.59379 -31.70661 -30.90375 -29.29106 -28.57880 -25.11673 -23.71126 -22.55849 -21.33533 -20.14216 -18.37444 -16.76154 -16.49116 -15.74274 -15.62636 -14.87402 -14.57412 -14.37522 -13.93388 -13.75981 -13.61869 -13.42578 -13.20110 -13.16275 -12.72756 -12.50533 -12.40486 -12.35522 -11.90355 -11.75370 -11.61667 -11.30467 -11.09492 -10.81119 -10.70115 -10.47099 -8.95334 -8.09058 -6.13532 1.40203 1.43511 1.50890 2.47443 3.23041 3.48671 3.69993 3.70734 4.03714 4.10872 4.28809 4.44481 4.55903 4.58282 4.60035 4.66990 4.71366 4.92776 4.96526 4.99393 5.03279 5.11247 5.20032 5.22623 5.27222 5.31939 5.36248 5.51478 5.61162 5.67354 5.78124 5.91002 6.38577 6.59666 6.79249 7.00417 7.51661 9.03116 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.008704 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.239261 B = 3216.175155 C = 3972.663758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.053 0.947 4 C 0.038 3.962 5 C -0.497 4.497 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.062 3.938 15 H 0.066 0.934 16 C -0.132 4.132 17 C -0.099 4.099 18 H 0.100 0.900 19 C -0.137 4.137 20 C -0.103 4.103 21 H 0.084 0.916 22 C -0.136 4.136 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.052 0.948 26 H -0.010 1.010 27 H -0.011 1.011 28 H 0.258 0.742 29 H 0.335 0.665 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 4.521 16.371 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 H 0.071 0.929 4 C 0.000 4.000 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.300 5.300 14 C -0.048 4.048 15 H 0.084 0.916 16 C -0.170 4.170 17 C -0.117 4.117 18 H 0.118 0.882 19 C -0.194 4.194 20 C -0.122 4.122 21 H 0.103 0.897 22 C -0.194 4.194 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.182 4.506 16.052 16.973 hybrid contribution 0.034 -0.096 -0.610 0.619 sum -3.148 4.410 15.442 16.364 Atomic orbital electron populations 1.22413 0.96805 1.01688 1.01771 1.21463 0.91946 0.96578 0.91051 0.92874 1.18992 0.95145 0.94104 0.91735 1.21460 0.93418 1.32227 1.06438 0.92649 1.25878 1.02937 0.95726 0.95815 1.70094 1.37157 1.37980 1.13196 0.85635 0.80590 0.78344 0.77226 1.19780 1.21143 1.19535 1.60532 1.57525 1.09095 1.02825 1.23118 0.96888 0.95345 0.89452 0.91571 1.23105 0.97417 1.00194 0.96327 1.22440 0.96468 0.98799 0.94022 0.88222 1.21667 0.97879 1.00427 0.99421 1.22785 0.96554 0.98855 0.94043 0.89736 1.21700 0.95377 1.02106 1.00173 0.91727 0.92725 0.92873 0.99206 0.99216 0.93294 0.84671 0.91708 0.92799 0.92179 0.91414 0.93775 0.92991 0.91487 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.61 9.15 71.98 0.66 -4.95 16 2 C 0.10 4.13 2.40 44.91 0.11 4.24 16 3 H 0.05 2.29 7.86 -2.38 -0.02 2.27 16 4 C 0.04 2.03 4.65 29.85 0.14 2.17 16 5 C -0.50 -29.14 8.84 25.60 0.23 -28.91 16 6 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 7 C -0.01 -0.48 5.46 84.66 0.46 -0.01 16 8 N -0.94 -59.31 13.29 21.45 0.28 -59.03 16 9 Si 0.96 46.63 29.54 68.60 2.03 48.66 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 13 N -0.67 -25.24 6.01 -466.79 -2.80 -28.05 16 14 C 0.06 1.87 3.37 45.44 0.15 2.02 16 15 H 0.07 1.93 7.43 -2.38 -0.02 1.91 16 16 C -0.13 -4.03 7.43 31.12 0.23 -3.80 16 17 C -0.10 -2.25 3.91 -10.27 -0.04 -2.29 16 18 H 0.10 1.97 7.97 -2.38 -0.02 1.95 16 19 C -0.14 -2.80 9.68 71.98 0.70 -2.10 16 20 C -0.10 -2.49 3.52 -10.27 -0.04 -2.53 16 21 H 0.08 2.23 8.10 -2.39 -0.02 2.22 16 22 C -0.14 -2.59 9.71 71.98 0.70 -1.89 16 23 H 0.06 1.80 7.68 -2.39 -0.02 1.78 16 24 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 25 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 26 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.33 11.85 8.32 -89.69 -0.75 11.10 16 30 H 0.06 2.32 8.01 -2.39 -0.02 2.30 16 31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.02 8.01 -2.39 -0.02 1.00 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.06 7.95 -2.39 -0.02 1.04 16 Total: -1.00 -65.05 298.91 3.06 -61.99 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.26 Total: 14.49 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 3.30 Total: -38.06 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.52 Total: -87.08 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -65.05 3.06 -61.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.265 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds