Wall clock time and date at job start Mon Mar 30 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47269 * 2 1 4 4 C 1.52994 * 109.47319 * 239.99584 * 2 1 3 5 5 C 1.50700 * 109.47513 * 175.00170 * 4 2 1 6 6 H 1.07997 * 119.99807 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00207 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00083 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99859 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47349 * 59.99967 * 9 7 5 11 11 H 1.48509 * 109.47117 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47535 * 299.99489 * 9 7 5 13 13 N 1.46903 * 109.47296 * 119.99486 * 2 1 3 14 14 C 1.46895 * 111.00157 * 275.00194 * 13 2 1 15 15 H 1.09000 * 112.84863 * 354.42632 * 14 13 2 16 16 C 1.53784 * 113.61299 * 223.22974 * 14 13 2 17 17 C 1.53782 * 87.07850 * 270.79710 * 16 14 13 18 18 H 1.09002 * 113.61030 * 220.01783 * 17 16 14 19 19 C 1.52997 * 113.61285 * 89.20753 * 17 16 14 20 20 C 1.53775 * 87.08364 * 334.56664 * 17 16 14 21 21 H 1.09001 * 113.61996 * 270.88205 * 20 17 16 22 22 C 1.53002 * 113.61232 * 139.97910 * 20 17 16 23 23 H 1.08999 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46892 * 300.00478 * 1 2 3 25 25 H 1.08997 * 109.47265 * 60.00246 * 1 2 3 26 26 H 1.09000 * 109.47343 * 295.00089 * 4 2 1 27 27 H 1.09002 * 109.47434 * 55.00167 * 4 2 1 28 28 H 0.97005 * 120.00576 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00175 * 151.04415 * 13 2 1 30 30 H 1.08996 * 113.61456 * 25.35035 * 16 14 13 31 31 H 1.09010 * 113.61153 * 156.25186 * 16 14 13 32 32 H 1.08998 * 109.47838 * 64.44524 * 19 17 16 33 33 H 1.08996 * 109.47279 * 184.45147 * 19 17 16 34 34 H 1.09004 * 109.46712 * 304.44762 * 19 17 16 35 35 H 1.09002 * 109.47152 * 322.50651 * 22 20 17 36 36 H 1.09003 * 109.47009 * 82.50351 * 22 20 17 37 37 H 1.08996 * 109.46962 * 202.50127 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1928 -2.3582 8 7 3.5764 -1.8371 -3.2998 9 14 6.0919 -1.0604 -2.4372 10 1 6.6845 -1.6865 -1.2280 11 1 6.5870 -1.7607 -3.6496 12 1 6.4844 0.3705 -2.4966 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2227 2.3469 15 1 1.8516 1.2538 2.0790 16 6 3.3650 0.0757 3.1826 17 6 2.6139 -0.9850 4.0045 18 1 2.8121 -0.9290 5.0749 19 6 2.7532 -2.4034 3.4480 20 6 1.3146 -0.2798 3.5809 21 1 1.0089 0.5167 4.2592 22 6 0.1759 -1.2443 3.2433 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2619 -2.1369 28 1 4.0607 -2.2440 -4.0353 29 1 2.9173 -1.1204 1.0288 30 1 4.2089 -0.3242 2.6206 31 1 3.6198 0.9696 3.7522 32 1 3.7954 -2.7167 3.5085 33 1 2.1344 -3.0851 4.0314 34 1 2.4290 -2.4188 2.4074 35 1 0.5796 -2.1188 2.7330 36 1 -0.3202 -1.5567 4.1622 37 1 -0.5431 -0.7445 2.5942 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709982134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:22 Heat of formation + Delta-G solvation = 1.134918 kcal Electronic energy + Delta-G solvation = -14892.445766 eV Core-core repulsion = 12669.607965 eV Total energy + Delta-G solvation = -2222.837801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.65406 -35.45604 -32.45627 -29.86067 -29.33950 -27.93814 -27.30118 -23.22062 -22.59568 -21.76306 -19.49326 -17.69168 -16.36284 -15.91627 -14.66723 -14.57938 -14.25266 -13.73725 -13.10729 -12.84461 -12.60281 -11.96535 -11.83911 -11.60560 -11.49566 -11.26427 -11.13117 -11.06566 -10.84929 -10.61776 -10.50745 -10.25115 -10.11124 -9.70289 -9.53908 -9.09268 -9.03815 -8.38838 -7.55735 -6.02090 -4.05161 3.30783 3.35971 3.37779 4.43381 4.73806 4.92478 4.99118 5.16499 5.33167 5.46184 5.78581 5.82141 5.89466 6.00898 6.05281 6.12189 6.13020 6.22904 6.29189 6.30045 6.33845 6.40409 6.49821 6.66923 6.75539 6.86487 6.94256 6.99584 7.03748 7.58944 7.65935 7.98166 8.13417 8.31932 8.39535 9.01056 9.58954 11.08694 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.009311 C = 0.008033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.713571 B = 3006.400236 C = 3484.635750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.073 3.927 15 H 0.057 0.943 16 C -0.159 4.159 17 C -0.101 4.101 18 H 0.060 0.940 19 C -0.145 4.145 20 C -0.106 4.106 21 H 0.075 0.925 22 C -0.128 4.128 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.357 0.643 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 2.076 11.981 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.292 5.292 14 C -0.038 4.038 15 H 0.075 0.925 16 C -0.197 4.197 17 C -0.119 4.119 18 H 0.078 0.922 19 C -0.202 4.202 20 C -0.126 4.126 21 H 0.093 0.907 22 C -0.185 4.185 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.180 0.820 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.825 1.713 11.945 12.659 hybrid contribution 1.893 0.715 -0.275 2.043 sum -1.932 2.429 11.669 12.075 Atomic orbital electron populations 1.21825 0.96824 1.01193 0.99348 1.21699 0.93321 0.95759 0.91369 0.95333 1.19275 0.95325 0.96169 0.90919 1.21140 0.92264 1.34477 1.08302 0.93092 1.24980 0.98141 0.95225 0.95718 1.69946 1.35557 1.35546 1.11926 0.86717 0.86031 0.78137 0.77451 1.20218 1.21295 1.20404 1.60467 1.34265 1.30835 1.03658 1.22640 0.94760 0.94929 0.91461 0.92524 1.23477 0.97780 0.99032 0.99435 1.22242 0.96642 0.95132 0.97928 0.92196 1.21799 1.00514 0.94101 1.03793 1.22659 0.94635 0.98012 0.97290 0.90670 1.21568 0.97199 1.00345 0.99378 0.92725 0.94342 0.93627 0.95645 0.96167 0.92916 0.81989 0.91174 0.90707 0.93505 0.93304 0.88908 0.90719 0.94933 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.07 37.16 0.34 -2.07 16 2 C 0.09 1.80 2.51 -67.72 -0.17 1.63 16 3 H 0.03 0.61 7.52 -51.93 -0.39 0.22 16 4 C 0.02 0.52 4.57 -27.89 -0.13 0.39 16 5 C -0.52 -14.25 8.12 -34.44 -0.28 -14.53 16 6 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.66 -12.19 3.63 -98.89 -0.36 -12.55 16 14 C 0.07 1.18 4.00 -66.90 -0.27 0.91 16 15 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 16 C -0.16 -2.33 7.28 -25.92 -0.19 -2.52 16 17 C -0.10 -1.39 4.46 -89.81 -0.40 -1.79 16 18 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -2.07 8.05 37.16 0.30 -1.77 16 20 C -0.11 -1.50 4.30 -89.81 -0.39 -1.88 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 22 C -0.13 -1.81 8.82 37.16 0.33 -1.48 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.62 7.16 -51.93 -0.37 0.25 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.36 7.29 5.82 -39.29 -0.23 7.06 16 30 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 31 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.09 1.51 4.47 -51.93 -0.23 1.28 16 35 H 0.07 1.15 5.52 -51.93 -0.29 0.86 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.75 6.85 -51.93 -0.36 0.39 16 LS Contribution 284.14 15.07 4.28 4.28 Total: -1.00 -27.68 284.14 -7.72 -35.40 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.41 Total: 3.64 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -0.95 Total: -21.48 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.38 Total: -38.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.68 -7.72 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.534 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds