Wall clock time and date at job start Mon Mar 30 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99804 * 2 1 3 5 5 N 1.46898 * 109.47006 * 64.99980 * 4 2 1 6 6 C 1.47453 * 111.00003 * 69.87544 * 5 4 2 7 7 C 1.54316 * 107.23529 * 123.25519 * 6 5 4 8 8 C 1.55144 * 103.01844 * 22.28439 * 7 6 5 9 9 H 1.08996 * 110.99158 * 82.47268 * 8 7 6 10 10 C 1.50706 * 110.98729 * 206.25555 * 8 7 6 11 11 H 1.08001 * 119.99699 * 118.54464 * 10 8 7 12 12 C 1.37869 * 120.00083 * 298.54236 * 10 8 7 13 13 N 1.31516 * 120.00203 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00015 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47115 * 90.00109 * 14 12 10 16 16 H 1.48501 * 109.47292 * 209.99868 * 14 12 10 17 17 H 1.48496 * 109.47434 * 330.00223 * 14 12 10 18 18 C 1.47845 * 111.00073 * 190.71138 * 5 4 2 19 19 H 1.09000 * 110.37147 * 332.47395 * 18 5 4 20 20 C 1.53000 * 110.37268 * 94.80444 * 18 5 4 21 21 H 1.09002 * 109.46911 * 60.00115 * 1 2 3 22 22 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47273 * 300.00044 * 1 2 3 24 24 H 1.08997 * 109.46828 * 239.99768 * 2 1 3 25 25 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47069 * 299.99788 * 3 2 1 27 27 H 1.09001 * 109.47018 * 59.99799 * 3 2 1 28 28 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 29 29 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 30 30 H 1.08999 * 109.88278 * 242.66259 * 6 5 4 31 31 H 1.08998 * 109.88923 * 3.68654 * 6 5 4 32 32 H 1.08999 * 110.70430 * 140.66315 * 7 6 5 33 33 H 1.09002 * 110.70624 * 263.90004 * 7 6 5 34 34 H 0.97001 * 120.00518 * 179.97438 * 13 12 10 35 35 H 1.09009 * 109.46636 * 58.54833 * 20 18 5 36 36 H 1.08993 * 109.47214 * 178.54429 * 20 18 5 37 37 H 1.08997 * 109.47479 * 298.55608 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 -2.1367 1.1905 6 6 2.4042 -2.8482 0.1412 7 6 3.1299 -4.0289 0.8200 8 6 2.2964 -4.2572 2.1085 9 1 1.4148 -4.8636 1.9009 10 6 3.1368 -4.8841 3.1910 11 1 3.2961 -4.3607 4.1222 12 6 3.7021 -6.1258 2.9927 13 7 3.5085 -6.7630 1.8586 14 14 4.7432 -6.9032 4.3348 15 1 3.8762 -7.7151 5.2260 16 1 5.7745 -7.7759 3.7183 17 1 5.4066 -5.8367 5.1270 18 6 1.8981 -2.8081 2.4843 19 1 2.7121 -2.3169 3.0175 20 6 0.6266 -2.8088 3.3352 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1263 -0.6444 1.2953 29 1 1.6053 -0.2617 2.1370 30 1 1.7179 -3.2222 -0.6186 31 1 3.1309 -2.1757 -0.3144 32 1 3.1056 -4.9134 0.1836 33 1 4.1565 -3.7591 1.0679 34 1 3.9066 -7.6365 1.7189 35 1 -0.1722 -3.3164 2.7943 36 1 0.8176 -3.3293 4.2736 37 1 0.3283 -1.7814 3.5437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710008617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:43 Heat of formation + Delta-G solvation = -22.629716 kcal Electronic energy + Delta-G solvation = -14785.931809 eV Core-core repulsion = 12562.063497 eV Total energy + Delta-G solvation = -2223.868313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.56638 -35.41437 -32.70137 -30.46144 -29.81950 -26.90704 -26.19351 -24.17308 -23.34981 -20.53608 -18.96957 -18.86693 -16.52429 -15.26957 -14.74326 -14.37076 -14.12521 -13.81676 -12.91516 -12.74486 -12.56539 -12.12609 -12.04493 -11.76993 -11.50376 -11.23305 -10.93254 -10.92238 -10.72835 -10.67723 -10.54826 -10.32551 -10.09858 -9.99294 -9.55735 -8.99166 -8.78356 -8.37400 -7.51678 -6.00379 -4.03386 3.30673 3.37465 3.40408 4.42727 4.69089 5.09097 5.20565 5.32971 5.43657 5.71497 5.77147 5.86179 5.91585 5.98992 6.05451 6.10516 6.18816 6.24115 6.32055 6.38099 6.42313 6.50917 6.60264 6.64899 6.73604 6.83079 7.01528 7.24471 7.27755 7.67812 7.80816 7.85351 7.97366 8.06879 8.46250 8.98481 9.60663 11.09183 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052586 B = 0.007515 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.334258 B = 3724.793851 C = 3846.633373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C -0.146 4.146 4 C 0.058 3.942 5 N -0.528 5.528 6 C 0.040 3.960 7 C -0.118 4.118 8 C 0.056 3.944 9 H 0.036 0.964 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.068 3.932 19 H 0.041 0.959 20 C -0.120 4.120 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 10.993 -2.721 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.070 4.070 5 N -0.252 5.252 6 C -0.088 4.088 7 C -0.157 4.157 8 C 0.037 3.963 9 H 0.055 0.945 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.039 4.039 19 H 0.059 0.941 20 C -0.178 4.178 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.665 10.819 -2.929 11.792 hybrid contribution 1.574 -0.414 0.829 1.826 sum -2.091 10.404 -2.101 10.818 Atomic orbital electron populations 1.21683 0.94866 1.02590 1.00021 1.21118 0.96586 0.94905 0.98562 1.21824 1.00659 0.96540 1.01320 1.22239 0.97133 0.90283 0.97386 1.63501 1.55138 1.00732 1.05865 1.22886 0.95221 0.96180 0.94514 1.22685 0.98146 0.95702 0.99174 1.19739 0.95055 0.88924 0.92548 0.94546 1.21054 1.30884 1.02306 1.00818 0.92688 1.24956 0.96390 0.97042 0.95438 1.69966 1.44678 1.14273 1.23787 0.86638 0.80216 0.79292 0.82114 1.20660 1.21302 1.20005 1.22693 0.95377 0.97374 0.88473 0.94071 1.21558 0.97723 0.99293 0.99253 0.94071 0.91274 0.93509 0.91440 0.93095 0.92972 0.92921 0.95547 0.91782 0.92182 0.94682 0.90944 0.93580 0.93084 0.92911 0.92566 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.08 37.16 0.34 -1.43 16 2 C -0.09 -1.28 2.89 -90.62 -0.26 -1.54 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C 0.06 0.95 3.93 -3.82 -0.02 0.94 16 5 N -0.53 -10.09 4.27 -223.38 -0.95 -11.04 16 6 C 0.04 0.79 6.14 -2.83 -0.02 0.77 16 7 C -0.12 -2.81 5.64 -24.91 -0.14 -2.95 16 8 C 0.06 1.42 2.38 -89.63 -0.21 1.20 16 9 H 0.04 1.00 8.06 -51.93 -0.42 0.59 16 10 C -0.51 -14.05 8.55 -34.44 -0.29 -14.34 16 11 H 0.05 1.49 7.79 -52.49 -0.41 1.09 16 12 C 0.06 1.76 5.34 -17.82 -0.10 1.67 16 13 N -0.89 -25.56 12.12 55.43 0.67 -24.89 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.07 1.45 2.45 -66.19 -0.16 1.29 16 19 H 0.04 0.92 7.70 -51.93 -0.40 0.52 16 20 C -0.12 -2.31 9.59 37.16 0.36 -1.96 16 21 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 1.03 7.75 -51.92 -0.40 0.63 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.98 7.04 -51.93 -0.37 0.61 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.45 7.96 -51.93 -0.41 0.03 16 29 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.64 6.94 -51.93 -0.36 0.28 16 32 H 0.07 1.85 7.54 -51.93 -0.39 1.46 16 33 H 0.05 1.14 8.03 -51.93 -0.42 0.72 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -27.65 290.87 -8.02 -35.67 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.94 Total: -2.77 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.16 Total: -17.67 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.28 Total: -35.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.65 -8.02 -35.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.042 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds