Wall clock time and date at job start Mon Mar 30 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99804 * 2 1 3 5 5 N 1.46898 * 109.47006 * 64.99980 * 4 2 1 6 6 C 1.47453 * 111.00003 * 69.87544 * 5 4 2 7 7 C 1.54316 * 107.23529 * 123.25519 * 6 5 4 8 8 C 1.55144 * 103.01844 * 22.28439 * 7 6 5 9 9 H 1.08996 * 110.99158 * 82.47268 * 8 7 6 10 10 C 1.50706 * 110.98729 * 206.25555 * 8 7 6 11 11 H 1.08001 * 119.99699 * 118.54464 * 10 8 7 12 12 C 1.37869 * 120.00083 * 298.54236 * 10 8 7 13 13 N 1.31516 * 120.00203 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00015 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47115 * 90.00109 * 14 12 10 16 16 H 1.48501 * 109.47292 * 209.99868 * 14 12 10 17 17 H 1.48496 * 109.47434 * 330.00223 * 14 12 10 18 18 C 1.47845 * 111.00073 * 190.71138 * 5 4 2 19 19 H 1.09000 * 110.37147 * 332.47395 * 18 5 4 20 20 C 1.53000 * 110.37268 * 94.80444 * 18 5 4 21 21 H 1.09002 * 109.46911 * 60.00115 * 1 2 3 22 22 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47273 * 300.00044 * 1 2 3 24 24 H 1.08997 * 109.46828 * 239.99768 * 2 1 3 25 25 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47069 * 299.99788 * 3 2 1 27 27 H 1.09001 * 109.47018 * 59.99799 * 3 2 1 28 28 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 29 29 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 30 30 H 1.08999 * 109.88278 * 242.66259 * 6 5 4 31 31 H 1.08998 * 109.88923 * 3.68654 * 6 5 4 32 32 H 1.08999 * 110.70430 * 140.66315 * 7 6 5 33 33 H 1.09002 * 110.70624 * 263.90004 * 7 6 5 34 34 H 0.97001 * 120.00518 * 179.97438 * 13 12 10 35 35 H 1.09009 * 109.46636 * 58.54833 * 20 18 5 36 36 H 1.08993 * 109.47214 * 178.54429 * 20 18 5 37 37 H 1.08997 * 109.47479 * 298.55608 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 -2.1367 1.1905 6 6 2.4042 -2.8482 0.1412 7 6 3.1299 -4.0289 0.8200 8 6 2.2964 -4.2572 2.1085 9 1 1.4148 -4.8636 1.9009 10 6 3.1368 -4.8841 3.1910 11 1 3.2961 -4.3607 4.1222 12 6 3.7021 -6.1258 2.9927 13 7 3.5085 -6.7630 1.8586 14 14 4.7432 -6.9032 4.3348 15 1 3.8762 -7.7151 5.2260 16 1 5.7745 -7.7759 3.7183 17 1 5.4066 -5.8367 5.1270 18 6 1.8981 -2.8081 2.4843 19 1 2.7121 -2.3169 3.0175 20 6 0.6266 -2.8088 3.3352 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1263 -0.6444 1.2953 29 1 1.6053 -0.2617 2.1370 30 1 1.7179 -3.2222 -0.6186 31 1 3.1309 -2.1757 -0.3144 32 1 3.1056 -4.9134 0.1836 33 1 4.1565 -3.7591 1.0679 34 1 3.9066 -7.6365 1.7189 35 1 -0.1722 -3.3164 2.7943 36 1 0.8176 -3.3293 4.2736 37 1 0.3283 -1.7814 3.5437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710008617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:43 Heat of formation + Delta-G solvation = -37.973196 kcal Electronic energy + Delta-G solvation = -14786.597153 eV Core-core repulsion = 12562.063497 eV Total energy + Delta-G solvation = -2224.533656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18209 -36.75253 -34.65428 -32.12548 -31.56571 -28.03178 -27.86910 -25.60543 -25.23181 -22.12463 -20.69238 -20.29973 -18.50835 -16.82187 -16.59953 -16.05683 -15.55367 -15.00153 -14.58655 -14.32679 -14.06313 -13.74322 -13.29498 -13.18208 -12.90164 -12.89800 -12.76233 -12.58167 -12.43267 -12.16790 -12.02281 -11.71969 -11.53540 -11.45081 -11.32885 -10.92354 -10.74709 -10.49572 -9.09566 -8.13470 -6.23687 1.40213 1.40680 1.50777 2.41716 3.15036 3.21567 3.93756 4.05187 4.15238 4.34047 4.36770 4.43097 4.61841 4.71041 4.74359 4.78538 4.80561 4.90462 4.92691 5.05059 5.09262 5.12056 5.18996 5.25600 5.32199 5.38744 5.50664 5.53891 5.59765 5.61910 5.82914 5.94381 6.13479 6.40884 6.43400 6.85683 7.43990 8.95547 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052586 B = 0.007515 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.334258 B = 3724.793851 C = 3846.633373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.057 3.943 5 N -0.525 5.525 6 C 0.051 3.949 7 C -0.112 4.112 8 C 0.049 3.951 9 H 0.004 0.996 10 C -0.529 4.529 11 H 0.053 0.947 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.954 3.046 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.268 1.268 18 C 0.076 3.924 19 H 0.032 0.968 20 C -0.113 4.113 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 12.715 -2.434 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.198 4.198 4 C -0.072 4.072 5 N -0.249 5.249 6 C -0.077 4.077 7 C -0.151 4.151 8 C 0.029 3.971 9 H 0.022 0.978 10 C -0.568 4.568 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.779 3.221 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.032 4.032 19 H 0.050 0.950 20 C -0.171 4.171 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.790 12.557 -2.640 13.380 hybrid contribution 1.599 -0.945 0.723 1.993 sum -2.192 11.612 -1.917 11.972 Atomic orbital electron populations 1.21638 0.94280 1.01589 1.01269 1.21099 0.97023 0.96050 0.96665 1.21777 1.00703 0.94827 1.02513 1.22377 0.96968 0.88493 0.99331 1.63550 1.54865 1.02147 1.04365 1.22759 0.95384 0.94988 0.94542 1.22493 0.97491 0.96411 0.98678 1.19677 0.93695 0.90849 0.92832 0.97818 1.21382 1.31213 1.02817 1.01339 0.92900 1.25746 0.97602 0.97612 0.97585 1.70094 1.45606 1.14559 1.25506 0.85620 0.78596 0.78422 0.79418 1.19992 1.20982 1.19297 1.22520 0.96078 0.94890 0.89722 0.94999 1.21474 0.96388 1.00872 0.98347 0.92285 0.93358 0.92855 0.92161 0.93043 0.91391 0.92154 0.96146 0.90940 0.91612 0.92817 0.93507 0.95252 0.93073 0.93379 0.93201 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.08 71.98 0.65 -2.43 16 2 C -0.09 -2.22 2.89 -10.79 -0.03 -2.26 16 3 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 4 C 0.06 1.72 3.93 86.31 0.34 2.06 16 5 N -0.53 -19.52 4.27 -860.63 -3.67 -23.19 16 6 C 0.05 2.00 6.14 86.64 0.53 2.53 16 7 C -0.11 -5.45 5.64 31.78 0.18 -5.27 16 8 C 0.05 2.50 2.38 -10.15 -0.02 2.47 16 9 H 0.00 0.21 8.06 -2.39 -0.02 0.19 16 10 C -0.53 -29.55 8.55 25.60 0.22 -29.33 16 11 H 0.05 2.90 7.79 -2.91 -0.02 2.88 16 12 C 0.01 0.76 5.34 84.65 0.45 1.21 16 13 N -0.92 -54.07 12.12 21.44 0.26 -53.81 16 14 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.08 3.21 2.45 45.39 0.11 3.32 16 19 H 0.03 1.41 7.70 -2.39 -0.02 1.39 16 20 C -0.11 -4.23 9.59 71.98 0.69 -3.54 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.34 7.75 -2.38 -0.02 1.32 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.60 7.04 -2.39 -0.02 1.58 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.02 0.65 7.96 -2.39 -0.02 0.63 16 29 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.05 1.90 6.94 -2.39 -0.02 1.89 16 32 H 0.05 2.48 7.54 -2.39 -0.02 2.46 16 33 H 0.03 1.48 8.03 -2.39 -0.02 1.46 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -59.47 290.87 3.39 -56.09 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.99 Total: 8.14 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.78 Total: -33.31 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -3.41 Total: -77.00 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.47 3.39 -56.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.113 kcal (2) G-P(sol) polarization free energy of solvation -59.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds