Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47005 * 60.00168 * 9 7 5 11 11 H 1.48506 * 109.46816 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47146 * 299.99801 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46904 * 110.99716 * 274.99847 * 13 2 1 15 15 H 1.08999 * 110.01762 * 33.60727 * 14 13 2 16 16 C 1.54261 * 110.03302 * 272.16401 * 14 13 2 17 17 C 1.54887 * 104.19596 * 217.10603 * 16 14 13 18 18 C 1.54882 * 102.75075 * 37.94375 * 17 16 14 19 19 C 1.53874 * 110.03159 * 154.99424 * 14 13 2 20 20 H 1.09000 * 110.03192 * 359.95356 * 19 14 13 21 21 C 1.52991 * 110.03480 * 238.57117 * 19 14 13 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 26 26 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 27 27 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99634 * 38.94573 * 13 2 1 29 29 H 1.09005 * 110.48578 * 335.78693 * 16 14 13 30 30 H 1.09008 * 110.48799 * 98.42579 * 16 14 13 31 31 H 1.09003 * 110.75732 * 279.62570 * 17 16 14 32 32 H 1.09003 * 110.91233 * 156.33536 * 17 16 14 33 33 H 1.08993 * 110.48890 * 203.38197 * 18 17 16 34 34 H 1.09004 * 110.60392 * 80.78785 * 18 17 16 35 35 H 1.08997 * 109.47448 * 60.00118 * 21 19 14 36 36 H 1.09003 * 109.47325 * 180.02562 * 21 19 14 37 37 H 1.09009 * 109.47130 * 299.99639 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.6838 -1.6884 -1.2264 11 1 6.5871 -1.7625 -3.6487 12 1 6.4855 0.3683 -2.4959 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2755 0.9528 2.2864 16 6 3.4467 0.9423 2.3748 17 6 3.7915 1.0445 3.8813 18 6 3.2816 -0.3066 4.4412 19 6 1.9774 -0.5715 3.6607 20 1 1.8790 -1.6357 3.4469 21 6 0.7739 -0.0867 4.4713 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2448 -4.0348 28 1 1.4495 -1.4979 1.4101 29 1 4.1994 0.3536 1.8502 30 1 3.3630 1.9358 1.9343 31 1 3.2624 1.8783 4.3430 32 1 4.8670 1.1425 4.0285 33 1 3.0773 -0.2245 5.5086 34 1 4.0067 -1.0982 4.2522 35 1 -0.1373 -0.2320 3.8911 36 1 0.7084 -0.6545 5.3995 37 1 0.8933 0.9722 4.7013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710009533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = -30.321912 kcal Electronic energy + Delta-G solvation = -14659.394009 eV Core-core repulsion = 12435.192137 eV Total energy + Delta-G solvation = -2224.201871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.74645 -35.55096 -32.45184 -30.85204 -29.94755 -27.20737 -26.42914 -24.35736 -22.84532 -20.46262 -19.54790 -18.94836 -16.16325 -15.68716 -14.98426 -14.42789 -14.34485 -13.74401 -13.10975 -12.90354 -12.64382 -12.33979 -12.12898 -11.84716 -11.60727 -11.35027 -10.88393 -10.75694 -10.64586 -10.48624 -10.47243 -10.36673 -10.32044 -10.09527 -9.90677 -9.15809 -8.91880 -8.19214 -7.44788 -5.81814 -3.78765 3.44440 3.47903 3.51511 4.61595 4.78894 4.80866 4.88187 5.19530 5.50796 5.53574 5.55757 5.60108 5.77220 5.81771 5.88278 5.94018 5.96488 6.04196 6.06716 6.11213 6.19660 6.26660 6.39629 6.43941 6.50837 6.64010 6.69756 6.87424 7.12939 7.67258 7.79568 8.14066 8.14982 8.28379 8.68035 9.26454 9.81936 11.30502 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.008955 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.711355 B = 3126.135128 C = 3768.283847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.658 5.658 14 C 0.089 3.911 15 H 0.037 0.963 16 C -0.114 4.114 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.100 4.100 20 H 0.075 0.925 21 C -0.142 4.142 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.257 0.743 28 H 0.329 0.671 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 4.117 13.939 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.288 5.288 14 C -0.022 4.022 15 H 0.055 0.945 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.152 4.152 19 C -0.119 4.119 20 H 0.093 0.907 21 C -0.199 4.199 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.269 4.098 13.603 14.578 hybrid contribution 0.027 0.097 0.031 0.105 sum -3.242 4.195 13.634 14.629 Atomic orbital electron populations 1.22561 0.99766 1.01060 1.00441 1.21810 0.89660 0.98124 0.92484 0.91920 1.19100 0.96209 0.95315 0.89765 1.21130 0.91921 1.32621 1.06657 0.92336 1.25008 0.97873 0.96038 0.96120 1.69961 1.35187 1.37146 1.12421 0.86717 0.86601 0.77901 0.77061 1.20403 1.21690 1.20600 1.60727 1.57474 1.08219 1.02416 1.22197 0.96491 0.93851 0.89642 0.94535 1.22445 0.97969 0.99843 0.94954 1.22469 1.00188 0.96908 0.96625 1.22334 0.96773 0.97785 0.98317 1.21939 0.94802 1.00208 0.94974 0.90651 1.21873 0.97643 1.00957 0.99476 0.92633 0.94536 0.93124 0.96611 0.96663 0.93372 0.85285 0.89632 0.92662 0.92362 0.92008 0.92389 0.91490 0.93067 0.93006 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 9.15 37.16 0.34 -2.77 16 2 C 0.09 1.83 2.37 -67.71 -0.16 1.67 16 3 H 0.06 1.34 7.77 -51.93 -0.40 0.94 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.48 -13.85 8.84 -34.44 -0.30 -14.15 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.92 13.29 55.43 0.74 -27.18 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.66 -12.47 5.73 -98.57 -0.56 -13.03 16 14 C 0.09 1.40 2.68 -66.60 -0.18 1.22 16 15 H 0.04 0.58 6.69 -51.93 -0.35 0.23 16 16 C -0.11 -1.84 6.40 -25.08 -0.16 -2.00 16 17 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 18 C -0.11 -1.43 6.37 -25.07 -0.16 -1.59 16 19 C -0.10 -1.33 3.18 -89.50 -0.28 -1.62 16 20 H 0.08 1.04 7.47 -51.93 -0.39 0.66 16 21 C -0.14 -1.59 8.83 37.15 0.33 -1.26 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.56 7.46 -51.93 -0.39 0.17 16 24 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.33 5.88 7.75 -39.29 -0.30 5.58 16 29 H 0.09 1.62 8.05 -51.93 -0.42 1.21 16 30 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.63 7.84 -51.93 -0.41 0.22 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 LS Contribution 293.35 15.07 4.42 4.42 Total: -1.00 -29.99 293.35 -8.25 -38.24 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.85 Total: 0.31 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -0.98 Total: -20.21 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.17 Total: -40.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.99 -8.25 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.921 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds