Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47005 * 60.00168 * 9 7 5 11 11 H 1.48506 * 109.46816 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47146 * 299.99801 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46904 * 110.99716 * 274.99847 * 13 2 1 15 15 H 1.08999 * 110.01762 * 33.60727 * 14 13 2 16 16 C 1.54261 * 110.03302 * 272.16401 * 14 13 2 17 17 C 1.54887 * 104.19596 * 217.10603 * 16 14 13 18 18 C 1.54882 * 102.75075 * 37.94375 * 17 16 14 19 19 C 1.53874 * 110.03159 * 154.99424 * 14 13 2 20 20 H 1.09000 * 110.03192 * 359.95356 * 19 14 13 21 21 C 1.52991 * 110.03480 * 238.57117 * 19 14 13 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 26 26 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 27 27 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99634 * 38.94573 * 13 2 1 29 29 H 1.09005 * 110.48578 * 335.78693 * 16 14 13 30 30 H 1.09008 * 110.48799 * 98.42579 * 16 14 13 31 31 H 1.09003 * 110.75732 * 279.62570 * 17 16 14 32 32 H 1.09003 * 110.91233 * 156.33536 * 17 16 14 33 33 H 1.08993 * 110.48890 * 203.38197 * 18 17 16 34 34 H 1.09004 * 110.60392 * 80.78785 * 18 17 16 35 35 H 1.08997 * 109.47448 * 60.00118 * 21 19 14 36 36 H 1.09003 * 109.47325 * 180.02562 * 21 19 14 37 37 H 1.09009 * 109.47130 * 299.99639 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.6838 -1.6884 -1.2264 11 1 6.5871 -1.7625 -3.6487 12 1 6.4855 0.3683 -2.4959 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2755 0.9528 2.2864 16 6 3.4467 0.9423 2.3748 17 6 3.7915 1.0445 3.8813 18 6 3.2816 -0.3066 4.4412 19 6 1.9774 -0.5715 3.6607 20 1 1.8790 -1.6357 3.4469 21 6 0.7739 -0.0867 4.4713 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2448 -4.0348 28 1 1.4495 -1.4979 1.4101 29 1 4.1994 0.3536 1.8502 30 1 3.3630 1.9358 1.9343 31 1 3.2624 1.8783 4.3430 32 1 4.8670 1.1425 4.0285 33 1 3.0773 -0.2245 5.5086 34 1 4.0067 -1.0982 4.2522 35 1 -0.1373 -0.2320 3.8911 36 1 0.7084 -0.6545 5.3995 37 1 0.8933 0.9722 4.7013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = -48.317587 kcal Electronic energy + Delta-G solvation = -14660.174360 eV Core-core repulsion = 12435.192137 eV Total energy + Delta-G solvation = -2224.982222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98309 -37.11881 -34.59189 -31.89313 -31.50674 -29.13701 -27.62497 -25.56389 -24.80573 -21.84104 -20.93659 -20.23324 -18.35954 -17.01388 -16.58361 -16.02451 -15.64490 -15.30613 -14.58348 -14.16594 -14.13536 -13.67366 -13.38242 -13.24293 -13.20596 -13.16172 -12.63284 -12.45637 -12.18350 -11.95547 -11.84201 -11.67355 -11.45788 -11.40755 -11.27919 -11.09021 -11.01797 -10.47386 -8.93963 -8.08722 -6.13050 1.40232 1.43479 1.50818 2.47559 3.23231 3.45977 3.69805 3.81273 4.10288 4.26142 4.44172 4.52344 4.53373 4.57583 4.60048 4.68048 4.78776 4.86397 4.94268 5.02556 5.12858 5.17649 5.21124 5.23105 5.29058 5.32307 5.38484 5.50700 5.52662 5.60945 5.74851 5.91485 6.38666 6.58785 6.80732 7.00883 7.52103 9.03490 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.008955 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.711355 B = 3126.135128 C = 3768.283847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 H 0.053 0.947 4 C 0.038 3.962 5 C -0.496 4.496 6 H 0.056 0.944 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.676 5.676 14 C 0.089 3.911 15 H 0.042 0.958 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.097 4.097 20 H 0.067 0.933 21 C -0.136 4.136 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.052 0.948 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.258 0.742 28 H 0.334 0.666 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 4.848 16.076 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 H 0.071 0.929 4 C 0.001 3.999 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.307 5.307 14 C -0.021 4.021 15 H 0.060 0.940 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.116 4.116 20 H 0.085 0.915 21 C -0.194 4.194 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.067 0.933 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.184 4.838 15.758 16.789 hybrid contribution -0.007 -0.132 -0.647 0.660 sum -3.190 4.706 15.111 16.145 Atomic orbital electron populations 1.22409 0.96910 1.01687 1.01737 1.21447 0.91872 0.96616 0.91038 0.92851 1.18988 0.95182 0.94078 0.91676 1.21465 0.93366 1.32143 1.06432 0.92538 1.25874 1.02899 0.95775 0.95828 1.70095 1.37110 1.38162 1.13099 0.85644 0.80652 0.78342 0.77219 1.19767 1.21178 1.19537 1.60574 1.57889 1.09161 1.03073 1.22279 0.96355 0.93720 0.89725 0.93957 1.22438 0.97266 0.98907 0.97166 1.22438 1.00943 0.97954 0.93987 1.22338 0.95942 0.97028 0.99665 1.21911 0.96455 0.99343 0.93918 0.91451 1.21828 0.96247 1.01579 0.99726 0.92686 0.91819 0.92850 0.99236 0.99253 0.93319 0.84753 0.93201 0.93138 0.90416 0.91418 0.89834 0.92604 0.93150 0.91304 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.67 9.15 71.98 0.66 -5.01 16 2 C 0.10 4.16 2.37 44.91 0.11 4.27 16 3 H 0.05 2.30 7.77 -2.39 -0.02 2.28 16 4 C 0.04 2.06 4.65 29.85 0.14 2.19 16 5 C -0.50 -28.99 8.84 25.60 0.23 -28.76 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 7 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 8 N -0.94 -59.35 13.29 21.45 0.28 -59.06 16 9 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 13 N -0.68 -25.56 5.73 -465.77 -2.67 -28.23 16 14 C 0.09 2.71 2.68 45.64 0.12 2.83 16 15 H 0.04 1.25 6.69 -2.39 -0.02 1.24 16 16 C -0.12 -3.78 6.40 31.67 0.20 -3.58 16 17 C -0.12 -2.73 6.91 31.88 0.22 -2.51 16 18 C -0.11 -2.51 6.37 31.67 0.20 -2.31 16 19 C -0.10 -2.37 3.18 -10.07 -0.03 -2.40 16 20 H 0.07 1.76 7.47 -2.39 -0.02 1.74 16 21 C -0.14 -2.59 8.83 71.98 0.64 -1.95 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 1.80 7.46 -2.39 -0.02 1.79 16 24 H 0.05 1.76 8.13 -2.38 -0.02 1.74 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.33 11.85 7.75 -89.69 -0.69 11.16 16 29 H 0.05 1.92 8.05 -2.38 -0.02 1.90 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.48 7.84 -2.39 -0.02 1.46 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -65.19 293.35 2.90 -62.30 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.31 Total: 13.61 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 2.94 Total: -37.25 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.38 Total: -87.30 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -65.19 2.90 -62.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.981 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds