Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 C 1.53002 * 109.46738 * 240.00781 * 2 1 3 5 5 C 1.50699 * 109.47228 * 175.00355 * 4 2 1 6 6 H 1.07999 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00378 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00322 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99718 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47374 * 90.00387 * 9 7 5 11 11 H 1.48504 * 109.47225 * 210.00360 * 9 7 5 12 12 H 1.48503 * 109.47184 * 329.99920 * 9 7 5 13 13 N 1.46894 * 109.47073 * 120.00967 * 2 1 3 14 14 C 1.46902 * 110.99928 * 274.99350 * 13 2 1 15 15 H 1.09009 * 110.01223 * 33.61216 * 14 13 2 16 16 C 1.54268 * 110.07698 * 272.19546 * 14 13 2 17 17 C 1.54882 * 104.19625 * 217.08005 * 16 14 13 18 18 C 1.54897 * 102.74839 * 37.94120 * 17 16 14 19 19 C 1.53876 * 110.03391 * 154.99795 * 14 13 2 20 20 H 1.08997 * 110.03133 * 238.61905 * 19 14 13 21 21 C 1.53000 * 110.07038 * 0.03209 * 19 14 13 22 22 H 1.09006 * 109.46663 * 299.99353 * 1 2 3 23 23 H 1.08996 * 109.46974 * 59.99140 * 1 2 3 24 24 H 1.08996 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46976 * 294.99999 * 4 2 1 26 26 H 1.08996 * 109.47612 * 54.99997 * 4 2 1 27 27 H 0.97003 * 120.00186 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00028 * 151.04620 * 13 2 1 29 29 H 1.08997 * 110.48664 * 98.39753 * 16 14 13 30 30 H 1.09002 * 110.48180 * 335.76028 * 16 14 13 31 31 H 1.08994 * 110.76048 * 279.62794 * 17 16 14 32 32 H 1.09004 * 110.75771 * 156.25188 * 17 16 14 33 33 H 1.08996 * 110.48686 * 80.73681 * 18 17 16 34 34 H 1.09000 * 110.48484 * 203.37978 * 18 17 16 35 35 H 1.09005 * 109.46867 * 178.63987 * 21 19 14 36 36 H 1.09000 * 109.47085 * 298.64133 * 21 19 14 37 37 H 1.09004 * 109.47037 * 58.64270 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0856 -0.5397 7 6 4.2302 -1.1925 -2.3586 8 7 5.5409 -1.0993 -2.4143 9 14 3.3012 -2.1073 -3.6963 10 1 2.9396 -1.1620 -4.7829 11 1 4.1599 -3.1874 -4.2452 12 1 2.0656 -2.7000 -3.1241 13 7 2.0197 -0.6927 1.1993 14 6 2.0826 0.2223 2.3468 15 1 1.2755 0.9525 2.2864 16 6 3.4463 0.9430 2.3753 17 6 3.7903 1.0455 3.8820 18 6 3.2811 -0.3062 4.4416 19 6 1.9775 -0.5719 3.6606 20 1 1.1196 -0.2271 4.2378 21 6 1.8412 -2.0662 3.3614 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.7515 -1.7714 -1.2058 26 1 1.6053 -0.2615 -2.1370 27 1 6.0252 -1.5054 -3.1502 28 1 2.9173 -1.1206 1.0285 29 1 3.3620 1.9364 1.9348 30 1 4.1995 0.3549 1.8511 31 1 3.2605 1.8787 4.3435 32 1 4.8663 1.1427 4.0268 33 1 4.0077 -1.0959 4.2511 34 1 3.0763 -0.2242 5.5090 35 1 1.7919 -2.6213 4.2982 36 1 0.9310 -2.2402 2.7875 37 1 2.7037 -2.4015 2.7853 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = -43.971286 kcal Electronic energy + Delta-G solvation = -14808.728334 eV Core-core repulsion = 12583.934582 eV Total energy + Delta-G solvation = -2224.793753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06342 -37.06578 -34.54622 -32.08596 -31.61712 -29.65529 -27.31115 -25.65953 -24.48581 -21.70024 -21.12052 -19.87264 -18.91620 -17.20732 -16.45649 -16.14227 -15.89609 -15.00653 -14.46867 -14.30235 -14.24320 -13.78211 -13.60840 -13.51341 -13.07699 -12.85748 -12.59670 -12.47347 -12.01810 -11.88816 -11.77918 -11.58911 -11.52544 -11.44803 -11.31067 -11.12121 -11.06105 -10.75692 -9.05023 -8.27729 -6.30227 1.35142 1.37604 1.49493 2.36775 3.06274 3.46943 3.73643 3.82266 4.08930 4.29231 4.45280 4.49711 4.56248 4.64206 4.70658 4.73837 4.82930 4.84936 4.99287 5.01865 5.11120 5.12477 5.14979 5.23551 5.25684 5.32759 5.38205 5.47874 5.55735 5.57310 5.70029 5.74876 6.26865 6.51062 6.66369 6.77038 7.33961 8.88255 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.008945 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.687832 B = 3129.449966 C = 3459.340664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.017 0.983 4 C -0.013 4.013 5 C -0.519 4.519 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.670 5.670 14 C 0.085 3.915 15 H 0.075 0.925 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.082 4.082 20 H 0.083 0.917 21 C -0.117 4.117 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.264 0.736 28 H 0.340 0.660 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 1.545 11.567 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.035 0.965 4 C -0.050 4.050 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.301 5.301 14 C -0.026 4.026 15 H 0.093 0.907 16 C -0.193 4.193 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.101 4.101 20 H 0.102 0.898 21 C -0.174 4.174 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.526 1.236 11.616 15.073 hybrid contribution 1.233 0.297 -1.321 1.832 sum -8.293 1.533 10.295 13.308 Atomic orbital electron populations 1.21730 0.93879 1.01829 1.01092 1.21330 0.95261 0.94641 0.90138 0.96518 1.19709 0.94142 0.96537 0.94645 1.21359 0.92080 1.33764 1.08539 0.94659 1.25924 0.95478 0.96952 1.00634 1.70067 1.08440 1.47085 1.33442 0.85702 0.79350 0.78634 0.79174 1.19557 1.21305 1.17229 1.60903 1.33655 1.31579 1.03962 1.22329 0.95373 0.93104 0.91778 0.90691 1.23065 0.98226 0.99961 0.98047 1.22404 1.00799 0.98459 0.93678 1.22458 0.96496 0.96558 0.99961 1.21753 0.98127 0.96147 0.94089 0.89847 1.21451 1.01625 0.94590 0.99749 0.92303 0.92482 0.92531 0.95905 0.96314 0.92716 0.84005 0.93127 0.94344 0.90060 0.91861 0.92654 0.89750 0.92816 0.92720 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.40 71.98 0.68 -3.37 16 2 C 0.10 3.81 2.43 44.92 0.11 3.92 16 3 H 0.02 0.71 7.77 -2.39 -0.02 0.69 16 4 C -0.01 -0.60 3.64 29.85 0.11 -0.49 16 5 C -0.52 -29.42 8.67 25.60 0.22 -29.20 16 6 H 0.04 2.19 7.73 -2.91 -0.02 2.17 16 7 C 0.01 0.40 5.47 84.65 0.46 0.87 16 8 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 9 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 13 N -0.67 -24.97 4.27 -465.75 -1.99 -26.96 16 14 C 0.08 2.65 2.98 45.64 0.14 2.78 16 15 H 0.07 2.25 7.16 -2.38 -0.02 2.23 16 16 C -0.15 -5.07 6.37 31.67 0.20 -4.87 16 17 C -0.12 -2.92 6.91 31.89 0.22 -2.70 16 18 C -0.12 -2.77 6.36 31.67 0.20 -2.57 16 19 C -0.08 -2.12 3.50 -10.07 -0.04 -2.15 16 20 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 21 C -0.12 -3.18 8.05 71.98 0.58 -2.60 16 22 H 0.06 1.65 7.46 -2.38 -0.02 1.63 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.02 1.08 7.20 -2.38 -0.02 1.06 16 26 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 27 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.34 14.83 6.12 -89.70 -0.55 14.28 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.54 7.56 -2.39 -0.02 1.52 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.43 7.85 -2.39 -0.02 1.41 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.05 1.58 7.87 -2.39 -0.02 1.56 16 37 H 0.03 1.08 7.43 -2.38 -0.02 1.07 16 Total: -1.00 -61.86 285.42 3.48 -58.37 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.41 Total: 21.44 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 2.88 Total: -40.40 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -1.69 Total: -86.15 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -61.86 3.48 -58.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -61.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds