Wall clock time and date at job start Mon Mar 30 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 C 1.53009 * 109.47386 * 240.00213 * 2 1 3 5 5 C 1.50702 * 109.47175 * 175.00082 * 4 2 1 6 6 H 1.07998 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99647 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99731 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46976 * 119.99674 * 9 7 5 12 12 H 1.48496 * 109.47002 * 239.99825 * 9 7 5 13 13 N 1.46897 * 109.47307 * 120.00360 * 2 1 3 14 14 C 1.46905 * 111.00138 * 275.00424 * 13 2 1 15 15 C 1.52999 * 109.47028 * 179.97438 * 14 13 2 16 16 H 1.08996 * 109.46929 * 304.98924 * 15 14 13 17 17 C 1.52997 * 109.47317 * 64.99820 * 15 14 13 18 18 C 1.53006 * 109.46623 * 184.99640 * 15 14 13 19 19 C 1.52998 * 117.49726 * 128.62051 * 18 15 14 20 20 C 1.52994 * 60.00190 * 252.51110 * 19 18 15 21 21 H 1.09004 * 109.46776 * 59.99908 * 1 2 3 22 22 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47065 * 300.00116 * 1 2 3 24 24 H 1.08996 * 109.46641 * 295.00544 * 4 2 1 25 25 H 1.09003 * 109.46591 * 54.99905 * 4 2 1 26 26 H 0.97003 * 119.99589 * 180.02562 * 8 7 5 27 27 H 1.00906 * 110.99758 * 38.95298 * 13 2 1 28 28 H 1.08994 * 109.47305 * 59.99331 * 14 13 2 29 29 H 1.08998 * 109.46287 * 299.99779 * 14 13 2 30 30 H 1.09002 * 109.47153 * 299.99641 * 17 15 14 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 32 32 H 1.09004 * 109.47261 * 59.99813 * 17 15 14 33 33 H 1.08994 * 115.55093 * 274.32950 * 18 15 14 34 34 H 1.09006 * 117.49620 * 0.02562 * 19 18 15 35 35 H 1.09005 * 117.49923 * 145.01658 * 19 18 15 36 36 H 1.09003 * 117.50142 * 252.51163 * 20 19 18 37 37 H 1.09002 * 117.50002 * 107.49116 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0791 -0.0862 -0.5392 7 6 4.2304 -1.1926 -2.3584 8 7 3.5764 -1.8368 -3.3001 9 14 6.0922 -1.0614 -2.4366 10 1 6.5839 -0.2920 -1.2655 11 1 6.6854 -2.4226 -2.4196 12 1 6.4871 -0.3648 -3.6872 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2224 2.3469 15 6 2.5950 -0.5334 3.5744 16 1 1.9690 -1.4083 3.7500 17 6 4.0385 -0.9792 3.3328 18 6 2.5427 0.3847 4.7972 19 6 1.8443 -0.1469 6.0504 20 6 1.1768 0.9401 5.2057 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7516 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1370 26 1 4.0608 -2.2435 -4.0355 27 1 1.4495 -1.4980 1.4099 28 1 1.0871 0.6162 2.5526 29 1 2.7588 1.0460 2.1182 30 1 4.0758 -1.6333 2.4617 31 1 4.4038 -1.5174 4.2075 32 1 4.6645 -0.1043 3.1573 33 1 3.4107 1.0285 4.9392 34 1 1.4225 -1.1509 6.0038 35 1 2.2530 0.1470 7.0173 36 1 1.1463 1.9492 5.6167 37 1 0.3155 0.6515 4.6033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710011955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:45 Heat of formation + Delta-G solvation = -0.715742 kcal Electronic energy + Delta-G solvation = -14261.902907 eV Core-core repulsion = 12038.984856 eV Total energy + Delta-G solvation = -2222.918052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.36630 -36.33672 -33.20264 -32.04849 -29.18920 -27.17801 -25.08260 -23.05358 -22.47906 -21.89113 -20.07810 -19.17378 -16.14024 -15.62262 -15.07380 -14.56324 -14.33893 -13.93916 -13.81094 -12.70518 -12.37350 -12.28568 -11.82854 -11.74914 -11.59373 -11.45648 -11.20528 -11.05560 -10.85503 -10.61080 -10.48807 -10.35214 -10.06453 -9.98759 -9.78063 -9.16731 -8.89850 -8.20716 -7.44562 -5.82795 -3.79752 3.41433 3.48646 3.54067 3.79714 4.60936 4.61764 4.88341 4.94331 5.05621 5.34996 5.54265 5.56848 5.59691 5.62607 5.74649 5.81219 5.86898 5.95713 6.06672 6.07678 6.17549 6.20771 6.26342 6.37270 6.53648 6.61789 6.69478 6.84260 7.09866 7.64278 7.76426 8.10613 8.13735 8.25939 8.66889 9.26054 9.81250 11.29526 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033705 B = 0.007404 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.531904 B = 3781.065731 C = 4425.466985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.663 5.663 14 C 0.067 3.933 15 C -0.057 4.057 16 H 0.064 0.936 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.182 4.182 20 C -0.183 4.183 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.036 0.964 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.256 0.744 27 H 0.328 0.672 28 H 0.017 0.983 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 3.645 14.895 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.005 4.005 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.292 5.292 14 C -0.062 4.062 15 C -0.076 4.076 16 H 0.082 0.918 17 C -0.193 4.193 18 C -0.160 4.160 19 C -0.219 4.219 20 C -0.220 4.220 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.145 0.855 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.495 3.642 14.568 15.417 hybrid contribution 0.026 0.143 0.117 0.187 sum -3.469 3.785 14.685 15.557 Atomic orbital electron populations 1.22552 0.99722 1.01074 1.00487 1.21776 0.89729 0.98118 0.92389 0.91929 1.19122 0.96245 0.95360 0.89769 1.21192 0.91917 1.32521 1.06595 0.92305 1.25010 0.97912 0.96036 0.96105 1.69979 1.35008 1.37243 1.12438 0.86595 0.86628 0.77525 0.77571 1.19850 1.21339 1.21487 1.60524 1.57492 1.08568 1.02620 1.21966 0.98122 0.95818 0.90339 1.20712 0.98300 0.96448 0.92125 0.91771 1.21685 0.94471 1.01575 1.01526 1.22415 0.95848 1.02146 0.95637 1.22978 1.04872 0.98830 0.95261 1.22910 0.96877 0.98209 1.04000 0.92598 0.93123 0.94508 0.96560 0.96604 0.93476 0.85481 0.96486 0.91503 0.90442 0.94045 0.93164 0.88002 0.89010 0.89267 0.89211 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.16 37.16 0.34 -2.74 16 2 C 0.09 1.83 2.53 -67.71 -0.17 1.66 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.92 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.48 -13.79 8.84 -34.44 -0.30 -14.10 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.91 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.66 -12.38 5.42 -106.72 -0.58 -12.96 16 14 C 0.07 1.06 4.79 -3.82 -0.02 1.04 16 15 C -0.06 -0.78 2.68 -90.62 -0.24 -1.02 16 16 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 17 C -0.14 -1.99 9.06 37.16 0.34 -1.66 16 18 C -0.14 -1.66 5.15 -90.62 -0.47 -2.13 16 19 C -0.18 -1.87 10.18 -26.74 -0.27 -2.14 16 20 C -0.18 -1.95 9.67 -26.73 -0.26 -2.21 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 23 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.33 5.78 8.47 -39.29 -0.33 5.44 16 28 H 0.02 0.25 6.42 -51.93 -0.33 -0.08 16 29 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 30 H 0.08 1.33 7.75 -51.93 -0.40 0.93 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -29.85 300.51 -8.46 -38.31 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.84 Total: 1.09 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -1.28 Total: -21.27 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.16 Total: -40.02 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.85 -8.46 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.599 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds