Wall clock time and date at job start Mon Mar 30 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 C 1.53009 * 109.47386 * 240.00213 * 2 1 3 5 5 C 1.50702 * 109.47175 * 175.00082 * 4 2 1 6 6 H 1.07998 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99647 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99731 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46976 * 119.99674 * 9 7 5 12 12 H 1.48496 * 109.47002 * 239.99825 * 9 7 5 13 13 N 1.46897 * 109.47307 * 120.00360 * 2 1 3 14 14 C 1.46905 * 111.00138 * 275.00424 * 13 2 1 15 15 C 1.52999 * 109.47028 * 179.97438 * 14 13 2 16 16 H 1.08996 * 109.46929 * 304.98924 * 15 14 13 17 17 C 1.52997 * 109.47317 * 64.99820 * 15 14 13 18 18 C 1.53006 * 109.46623 * 184.99640 * 15 14 13 19 19 C 1.52998 * 117.49726 * 128.62051 * 18 15 14 20 20 C 1.52994 * 60.00190 * 252.51110 * 19 18 15 21 21 H 1.09004 * 109.46776 * 59.99908 * 1 2 3 22 22 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47065 * 300.00116 * 1 2 3 24 24 H 1.08996 * 109.46641 * 295.00544 * 4 2 1 25 25 H 1.09003 * 109.46591 * 54.99905 * 4 2 1 26 26 H 0.97003 * 119.99589 * 180.02562 * 8 7 5 27 27 H 1.00906 * 110.99758 * 38.95298 * 13 2 1 28 28 H 1.08994 * 109.47305 * 59.99331 * 14 13 2 29 29 H 1.08998 * 109.46287 * 299.99779 * 14 13 2 30 30 H 1.09002 * 109.47153 * 299.99641 * 17 15 14 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 32 32 H 1.09004 * 109.47261 * 59.99813 * 17 15 14 33 33 H 1.08994 * 115.55093 * 274.32950 * 18 15 14 34 34 H 1.09006 * 117.49620 * 0.02562 * 19 18 15 35 35 H 1.09005 * 117.49923 * 145.01658 * 19 18 15 36 36 H 1.09003 * 117.50142 * 252.51163 * 20 19 18 37 37 H 1.09002 * 117.50002 * 107.49116 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0791 -0.0862 -0.5392 7 6 4.2304 -1.1926 -2.3584 8 7 3.5764 -1.8368 -3.3001 9 14 6.0922 -1.0614 -2.4366 10 1 6.5839 -0.2920 -1.2655 11 1 6.6854 -2.4226 -2.4196 12 1 6.4871 -0.3648 -3.6872 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2224 2.3469 15 6 2.5950 -0.5334 3.5744 16 1 1.9690 -1.4083 3.7500 17 6 4.0385 -0.9792 3.3328 18 6 2.5427 0.3847 4.7972 19 6 1.8443 -0.1469 6.0504 20 6 1.1768 0.9401 5.2057 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7516 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1370 26 1 4.0608 -2.2435 -4.0355 27 1 1.4495 -1.4980 1.4099 28 1 1.0871 0.6162 2.5526 29 1 2.7588 1.0460 2.1182 30 1 4.0758 -1.6333 2.4617 31 1 4.4038 -1.5174 4.2075 32 1 4.6645 -0.1043 3.1573 33 1 3.4107 1.0285 4.9392 34 1 1.4225 -1.1509 6.0038 35 1 2.2530 0.1470 7.0173 36 1 1.1463 1.9492 5.6167 37 1 0.3155 0.6515 4.6033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710011955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:45 Heat of formation + Delta-G solvation = -18.040905 kcal Electronic energy + Delta-G solvation = -14262.654183 eV Core-core repulsion = 12038.984856 eV Total energy + Delta-G solvation = -2223.669327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.45905 -37.75803 -34.96685 -33.70925 -30.74325 -29.04216 -26.38397 -24.97943 -23.46596 -22.89709 -21.58792 -20.44841 -18.35602 -16.66988 -16.53719 -16.27100 -15.76980 -15.23111 -15.13348 -14.41859 -14.01430 -13.53228 -13.42794 -13.21255 -13.09167 -12.92772 -12.58745 -12.39157 -12.34763 -12.23483 -11.96698 -11.88300 -11.58748 -11.20664 -11.06913 -10.96182 -10.65040 -10.47521 -8.92150 -8.08311 -6.12634 1.41139 1.42031 1.55125 2.48413 2.92931 3.24253 3.47373 3.83191 4.02045 4.11388 4.25360 4.27951 4.41605 4.53031 4.57724 4.59862 4.65509 4.83132 4.89910 4.93982 5.05415 5.09571 5.21258 5.23072 5.27264 5.30986 5.31343 5.44767 5.54397 5.62196 5.71458 5.92174 6.36950 6.53829 6.78759 7.01680 7.52797 9.04175 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033705 B = 0.007404 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.531904 B = 3781.065731 C = 4425.466985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.494 4.494 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.679 5.679 14 C 0.073 3.927 15 C -0.049 4.049 16 H 0.068 0.932 17 C -0.132 4.132 18 C -0.155 4.155 19 C -0.171 4.171 20 C -0.180 4.180 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.063 0.937 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.258 0.742 27 H 0.334 0.666 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 4.236 16.813 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.532 4.532 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.309 5.309 14 C -0.056 4.056 15 C -0.068 4.068 16 H 0.086 0.914 17 C -0.189 4.189 18 C -0.174 4.174 19 C -0.208 4.208 20 C -0.217 4.217 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.417 4.242 16.504 17.379 hybrid contribution -0.016 -0.049 -0.469 0.472 sum -3.433 4.193 16.035 16.926 Atomic orbital electron populations 1.22400 0.96848 1.01698 1.01787 1.21437 0.91979 0.96706 0.90966 0.92708 1.19010 0.95167 0.94174 0.91696 1.21497 0.93368 1.32048 1.06322 0.92678 1.25866 1.02880 0.95772 0.95820 1.70105 1.36965 1.38240 1.13136 0.85527 0.80718 0.77677 0.77871 1.19034 1.20858 1.20775 1.60356 1.57967 1.09444 1.03164 1.21947 0.98658 0.95045 0.89913 1.20612 0.97287 0.96799 0.92118 0.91355 1.21626 0.95469 1.00850 1.00968 1.22295 0.96813 1.02653 0.95609 1.23059 1.03697 0.98908 0.95146 1.22974 0.95819 0.99083 1.03840 0.92651 0.92852 0.91797 0.99114 0.99143 0.93329 0.84798 0.94963 0.93001 0.93437 0.92252 0.93819 0.87876 0.88749 0.87782 0.88038 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 9.16 71.98 0.66 -4.91 16 2 C 0.10 4.06 2.53 44.92 0.11 4.17 16 3 H 0.05 2.32 7.80 -2.39 -0.02 2.30 16 4 C 0.04 1.97 4.65 29.85 0.14 2.11 16 5 C -0.49 -28.67 8.84 25.60 0.23 -28.44 16 6 H 0.05 3.18 7.74 -2.91 -0.02 3.15 16 7 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 8 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 9 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.68 -25.15 5.42 -491.57 -2.66 -27.81 16 14 C 0.07 2.22 4.79 86.30 0.41 2.63 16 15 C -0.05 -1.27 2.68 -10.79 -0.03 -1.30 16 16 H 0.07 1.71 7.90 -2.39 -0.02 1.69 16 17 C -0.13 -3.78 9.06 71.98 0.65 -3.13 16 18 C -0.16 -3.27 5.15 -10.79 -0.06 -3.33 16 19 C -0.17 -2.97 10.18 30.59 0.31 -2.66 16 20 C -0.18 -3.31 9.67 30.59 0.30 -3.01 16 21 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 23 H 0.06 1.78 7.45 -2.39 -0.02 1.76 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.33 11.58 8.47 -89.69 -0.76 10.82 16 28 H 0.03 0.89 6.42 -2.39 -0.02 0.87 16 29 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 30 H 0.05 1.63 7.75 -2.39 -0.02 1.62 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.10 2.16 8.11 -2.39 -0.02 2.14 16 34 H 0.09 1.61 8.05 -2.38 -0.02 1.59 16 35 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.71 7.58 -2.39 -0.02 1.69 16 Total: -1.00 -64.13 300.51 3.08 -61.05 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.25 Total: 14.92 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 3.19 Total: -37.88 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.38 Total: -86.44 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -64.13 3.08 -61.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.006 kcal (2) G-P(sol) polarization free energy of solvation -64.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds