Wall clock time and date at job start Mon Mar 30 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 C 1.50700 * 109.46700 * 175.00032 * 4 2 1 6 6 H 1.07998 * 120.00711 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99794 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99647 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47390 * 59.99290 * 9 7 5 11 11 H 1.48493 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47107 * 299.99594 * 9 7 5 13 13 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 14 14 C 1.46906 * 110.99888 * 275.00023 * 13 2 1 15 15 C 1.52993 * 109.47378 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47360 * 54.99102 * 15 14 13 17 17 C 1.53009 * 109.47000 * 295.00175 * 15 14 13 18 18 C 1.52993 * 109.47489 * 175.00066 * 15 14 13 19 19 C 1.53002 * 117.49869 * 248.62121 * 18 15 14 20 20 C 1.53002 * 60.00045 * 252.50792 * 19 18 15 21 21 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 23 23 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 24 24 H 1.08997 * 109.47201 * 294.99945 * 4 2 1 25 25 H 1.08999 * 109.47075 * 55.00466 * 4 2 1 26 26 H 0.97007 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.00904 * 110.99913 * 38.95089 * 13 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 14 13 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 14 13 2 30 30 H 1.09007 * 109.46734 * 300.00132 * 17 15 14 31 31 H 1.09000 * 109.47100 * 59.99327 * 17 15 14 32 32 H 1.08992 * 109.47276 * 180.02562 * 17 15 14 33 33 H 1.09003 * 115.54987 * 34.32626 * 18 15 14 34 34 H 1.09000 * 117.49882 * 359.97438 * 19 18 15 35 35 H 1.08995 * 117.49936 * 145.01851 * 19 18 15 36 36 H 1.09001 * 117.49746 * 252.51067 * 20 19 18 37 37 H 1.08992 * 117.51687 * 107.48085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1926 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0920 -1.0614 -2.4367 10 1 6.6838 -1.6883 -1.2276 11 1 6.5871 -1.7613 -3.6492 12 1 6.4854 0.3694 -2.4952 13 7 2.0197 -0.6926 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5962 -0.5329 3.5741 16 1 3.5519 -1.0012 3.3388 17 6 1.5845 -1.6103 3.9703 18 6 2.7800 0.4458 4.7356 19 6 4.2104 0.7393 5.1925 20 6 3.2906 -0.1200 6.0623 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.7516 -1.7715 -1.2057 25 1 1.6054 -0.2617 -2.1370 26 1 4.0607 -2.2436 -4.0355 27 1 1.4495 -1.4980 1.4099 28 1 2.7589 1.0461 2.1183 29 1 1.0870 0.6162 2.5525 30 1 0.6286 -1.1420 4.2056 31 1 1.4534 -2.3076 3.1428 32 1 1.9502 -2.1481 4.8449 33 1 2.0594 1.2624 4.7807 34 1 5.0205 0.2347 4.6659 35 1 4.4312 1.7491 5.5382 36 1 2.9062 0.3246 6.9802 37 1 3.4952 -1.1896 6.1077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710011959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:51 Heat of formation + Delta-G solvation = -0.335527 kcal Electronic energy + Delta-G solvation = -14193.253496 eV Core-core repulsion = 11970.351932 eV Total energy + Delta-G solvation = -2222.901564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.36283 -36.41528 -33.27363 -32.00487 -29.05208 -27.18638 -25.60589 -23.09326 -22.25018 -21.81989 -19.88274 -19.34332 -16.21927 -15.66328 -15.22061 -14.46900 -14.31671 -13.94211 -13.59895 -12.95797 -12.69411 -12.28392 -12.09343 -11.73474 -11.56520 -11.42477 -11.17750 -11.04092 -10.81491 -10.62686 -10.49243 -10.43221 -10.05028 -9.96483 -9.78200 -9.17998 -8.92401 -8.19724 -7.46341 -5.82273 -3.79403 3.44492 3.47889 3.51718 3.83335 4.57320 4.61511 4.93933 4.96843 5.14322 5.22952 5.48508 5.51818 5.55530 5.62253 5.71507 5.80162 5.91041 5.92347 5.97234 6.04238 6.11844 6.13847 6.20383 6.27616 6.47496 6.49628 6.64644 6.70050 7.10132 7.64470 7.76444 8.10837 8.13974 8.26442 8.67129 9.25712 9.81371 11.29944 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027443 B = 0.007585 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.035801 B = 3690.560779 C = 4407.209488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.486 4.486 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.665 5.665 14 C 0.069 3.931 15 C -0.061 4.061 16 H 0.081 0.919 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.181 4.181 20 C -0.182 4.182 21 H 0.050 0.950 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.257 0.743 27 H 0.329 0.671 28 H 0.067 0.933 29 H 0.016 0.984 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 3.367 15.193 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.295 5.295 14 C -0.061 4.061 15 C -0.080 4.080 16 H 0.099 0.901 17 C -0.202 4.202 18 C -0.161 4.161 19 C -0.218 4.218 20 C -0.219 4.219 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.969 3.352 14.857 15.517 hybrid contribution 0.072 0.155 0.124 0.211 sum -2.897 3.507 14.981 15.656 Atomic orbital electron populations 1.22553 0.99681 1.01095 1.00516 1.21784 0.89778 0.98143 0.92390 0.91893 1.19110 0.96193 0.95355 0.89777 1.21122 0.91948 1.32765 1.06657 0.92444 1.25009 0.97936 0.95997 0.96078 1.69961 1.35212 1.37088 1.12399 0.86699 0.86510 0.77906 0.77046 1.20420 1.21666 1.20593 1.60563 1.57727 1.08664 1.02584 1.21926 0.98064 0.95738 0.90373 1.20754 1.00204 0.94648 0.92406 0.90087 1.21809 0.98662 0.98553 1.01150 1.22311 0.97163 1.01378 0.95258 1.23011 0.93985 1.00688 1.04066 1.22904 1.04875 0.99738 0.94417 0.93121 0.94469 0.92563 0.96573 0.96559 0.93351 0.85212 0.91444 0.96571 0.93285 0.92102 0.92973 0.88270 0.88610 0.89233 0.89332 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 9.16 37.16 0.34 -2.77 16 2 C 0.09 1.83 2.53 -67.71 -0.17 1.66 16 3 H 0.06 1.34 7.80 -51.93 -0.41 0.94 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.49 -14.01 8.84 -34.44 -0.30 -14.32 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.91 13.29 55.43 0.74 -27.17 16 9 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.66 -12.66 5.96 -106.73 -0.64 -13.30 16 14 C 0.07 1.09 4.92 -3.82 -0.02 1.07 16 15 C -0.06 -0.84 2.75 -90.62 -0.25 -1.09 16 16 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 17 C -0.14 -1.77 8.81 37.16 0.33 -1.44 16 18 C -0.14 -1.68 5.15 -90.62 -0.47 -2.15 16 19 C -0.18 -2.02 10.18 -26.73 -0.27 -2.29 16 20 C -0.18 -1.89 9.73 -26.73 -0.26 -2.15 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.33 5.88 6.73 -39.29 -0.26 5.61 16 28 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 29 H 0.02 0.24 7.44 -51.93 -0.39 -0.14 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16 32 H 0.05 0.58 7.29 -51.93 -0.38 0.20 16 33 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 34 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.95 7.61 -51.93 -0.39 0.56 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -30.21 298.42 -8.46 -38.66 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.73 Total: 1.20 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -1.30 Total: -21.40 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.10 Total: -40.47 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.21 -8.46 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.326 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds