Wall clock time and date at job start Mon Mar 30 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 C 1.50700 * 109.46700 * 175.00032 * 4 2 1 6 6 H 1.07998 * 120.00711 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99794 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99647 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47390 * 59.99290 * 9 7 5 11 11 H 1.48493 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47107 * 299.99594 * 9 7 5 13 13 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 14 14 C 1.46906 * 110.99888 * 275.00023 * 13 2 1 15 15 C 1.52993 * 109.47378 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47360 * 54.99102 * 15 14 13 17 17 C 1.53009 * 109.47000 * 295.00175 * 15 14 13 18 18 C 1.52993 * 109.47489 * 175.00066 * 15 14 13 19 19 C 1.53002 * 117.49869 * 248.62121 * 18 15 14 20 20 C 1.53002 * 60.00045 * 252.50792 * 19 18 15 21 21 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 23 23 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 24 24 H 1.08997 * 109.47201 * 294.99945 * 4 2 1 25 25 H 1.08999 * 109.47075 * 55.00466 * 4 2 1 26 26 H 0.97007 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.00904 * 110.99913 * 38.95089 * 13 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 14 13 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 14 13 2 30 30 H 1.09007 * 109.46734 * 300.00132 * 17 15 14 31 31 H 1.09000 * 109.47100 * 59.99327 * 17 15 14 32 32 H 1.08992 * 109.47276 * 180.02562 * 17 15 14 33 33 H 1.09003 * 115.54987 * 34.32626 * 18 15 14 34 34 H 1.09000 * 117.49882 * 359.97438 * 19 18 15 35 35 H 1.08995 * 117.49936 * 145.01851 * 19 18 15 36 36 H 1.09001 * 117.49746 * 252.51067 * 20 19 18 37 37 H 1.08992 * 117.51687 * 107.48085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1926 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0920 -1.0614 -2.4367 10 1 6.6838 -1.6883 -1.2276 11 1 6.5871 -1.7613 -3.6492 12 1 6.4854 0.3694 -2.4952 13 7 2.0197 -0.6926 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5962 -0.5329 3.5741 16 1 3.5519 -1.0012 3.3388 17 6 1.5845 -1.6103 3.9703 18 6 2.7800 0.4458 4.7356 19 6 4.2104 0.7393 5.1925 20 6 3.2906 -0.1200 6.0623 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.7516 -1.7715 -1.2057 25 1 1.6054 -0.2617 -2.1370 26 1 4.0607 -2.2436 -4.0355 27 1 1.4495 -1.4980 1.4099 28 1 2.7589 1.0461 2.1183 29 1 1.0870 0.6162 2.5525 30 1 0.6286 -1.1420 4.2056 31 1 1.4534 -2.3076 3.1428 32 1 1.9502 -2.1481 4.8449 33 1 2.0594 1.2624 4.7807 34 1 5.0205 0.2347 4.6659 35 1 4.4312 1.7491 5.5382 36 1 2.9062 0.3246 6.9802 37 1 3.4952 -1.1896 6.1077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710011959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:51 Heat of formation + Delta-G solvation = -18.108728 kcal Electronic energy + Delta-G solvation = -14194.024200 eV Core-core repulsion = 11970.351932 eV Total energy + Delta-G solvation = -2223.672268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.46163 -37.83299 -35.03533 -33.69484 -30.54671 -29.06042 -26.77524 -25.06157 -23.09337 -23.04245 -21.46263 -20.51778 -18.38499 -16.91987 -16.49267 -16.39581 -15.63440 -15.23632 -14.90071 -14.38033 -14.22704 -13.60252 -13.53516 -13.35382 -13.19191 -12.85830 -12.55746 -12.44921 -12.36148 -12.16083 -11.93523 -11.86267 -11.56311 -11.25312 -11.10501 -10.90349 -10.70266 -10.47545 -8.95828 -8.08973 -6.13768 1.40887 1.44171 1.51636 2.47798 2.95386 3.22631 3.40491 3.92704 4.02445 4.07120 4.21701 4.26107 4.39827 4.46591 4.54106 4.59942 4.70619 4.81915 4.84937 4.95695 4.98624 5.07814 5.10221 5.22283 5.25802 5.30001 5.31472 5.42269 5.52655 5.56092 5.70289 5.90865 6.35895 6.53088 6.78210 6.99977 7.51498 9.03040 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027443 B = 0.007585 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.035801 B = 3690.560779 C = 4407.209488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.056 0.944 4 C 0.037 3.963 5 C -0.500 4.500 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.684 5.684 14 C 0.074 3.926 15 C -0.056 4.056 16 H 0.057 0.943 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.189 4.189 20 C -0.167 4.167 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.055 0.945 24 H -0.010 1.010 25 H -0.009 1.009 26 H 0.259 0.741 27 H 0.336 0.664 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 3.967 17.061 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 H 0.074 0.926 4 C 0.000 4.000 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.315 5.315 14 C -0.055 4.055 15 C -0.075 4.075 16 H 0.075 0.925 17 C -0.197 4.197 18 C -0.170 4.170 19 C -0.226 4.226 20 C -0.204 4.204 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.904 3.960 16.744 17.449 hybrid contribution 0.044 -0.037 -0.453 0.457 sum -2.860 3.923 16.290 16.998 Atomic orbital electron populations 1.22401 0.96735 1.01731 1.01880 1.21455 0.92098 0.96757 0.90922 0.92605 1.19002 0.95105 0.94168 0.91746 1.21454 0.93456 1.32420 1.06473 0.92777 1.25878 1.02991 0.95682 0.95756 1.70092 1.37154 1.38014 1.13048 0.85621 0.80503 0.78352 0.77224 1.19812 1.21098 1.19528 1.60397 1.58279 1.09633 1.03217 1.21914 0.98703 0.94969 0.89931 1.20647 0.99298 0.95225 0.92306 0.92453 1.21769 0.98807 0.97967 1.01187 1.22249 0.97796 1.01520 0.95400 1.23064 0.93424 1.01583 1.04514 1.22977 1.03347 0.99783 0.94280 0.92865 0.91699 0.92547 0.99151 0.99025 0.93261 0.84496 0.92925 0.94840 0.92094 0.93245 0.91711 0.87398 0.89855 0.88018 0.87458 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.61 9.16 71.98 0.66 -4.95 16 2 C 0.10 4.04 2.53 44.92 0.11 4.15 16 3 H 0.06 2.37 7.80 -2.39 -0.02 2.36 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.50 -29.28 8.84 25.60 0.23 -29.05 16 6 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 8 N -0.94 -59.03 13.29 21.45 0.28 -58.75 16 9 Si 0.96 46.50 29.54 68.60 2.03 48.53 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.68 -25.82 5.96 -491.57 -2.93 -28.75 16 14 C 0.07 2.26 4.92 86.30 0.42 2.68 16 15 C -0.06 -1.46 2.75 -10.80 -0.03 -1.49 16 16 H 0.06 1.76 7.90 -2.39 -0.02 1.74 16 17 C -0.14 -3.17 8.81 71.99 0.63 -2.53 16 18 C -0.15 -3.25 5.15 -10.79 -0.06 -3.30 16 19 C -0.19 -3.92 10.18 30.60 0.31 -3.60 16 20 C -0.17 -3.01 9.73 30.60 0.30 -2.71 16 21 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 22 H 0.06 1.81 7.45 -2.39 -0.02 1.79 16 23 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.34 11.82 6.73 -89.69 -0.60 11.22 16 28 H 0.05 1.75 8.06 -2.38 -0.02 1.73 16 29 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 30 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.22 6.68 -2.39 -0.02 1.21 16 32 H 0.06 1.29 7.29 -2.39 -0.02 1.28 16 33 H 0.11 2.16 8.11 -2.39 -0.02 2.14 16 34 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.68 7.61 -2.39 -0.02 1.67 16 Total: -1.00 -64.86 298.42 2.97 -61.89 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.41 Total: 15.73 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.18 Total: -38.65 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -2.65 Total: -87.50 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -64.86 2.97 -61.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.777 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds