Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 N 1.46503 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99594 * 90.00145 * 4 3 2 6 6 H 1.08005 * 119.99679 * 213.98808 * 5 4 3 7 7 C 1.38804 * 120.00237 * 33.99339 * 5 4 3 8 8 N 1.31622 * 120.00237 * 24.49716 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 204.77358 * 7 5 4 10 10 H 1.48496 * 109.47122 * 269.72921 * 9 7 5 11 11 H 1.48508 * 109.46803 * 29.72494 * 9 7 5 12 12 H 1.48495 * 109.47562 * 149.72103 * 9 7 5 13 13 C 1.46497 * 120.00192 * 270.00280 * 4 3 2 14 14 C 1.53007 * 109.46815 * 272.86670 * 13 4 3 15 15 H 1.09000 * 115.55024 * 29.32732 * 14 13 4 16 16 C 1.53005 * 117.49660 * 243.62039 * 14 13 4 17 17 C 1.53001 * 117.49611 * 175.00010 * 14 13 4 18 18 C 1.52997 * 117.49594 * 214.97898 * 17 14 13 19 19 C 1.52997 * 117.49872 * 359.97438 * 17 14 13 20 20 H 1.08993 * 109.47649 * 59.99675 * 1 2 3 21 21 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46649 * 299.99489 * 1 2 3 23 23 H 1.09003 * 109.46649 * 240.00511 * 2 1 3 24 24 H 1.08993 * 109.47649 * 120.00325 * 2 1 3 25 25 H 1.08998 * 109.47065 * 60.00273 * 3 2 1 26 26 H 1.09003 * 109.47121 * 300.00032 * 3 2 1 27 27 H 0.96996 * 120.00207 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47271 * 32.86124 * 13 4 3 29 29 H 1.09003 * 109.47390 * 152.87039 * 13 4 3 30 30 H 1.09004 * 117.49706 * 0.02562 * 16 14 13 31 31 H 1.08998 * 117.49824 * 145.02216 * 16 14 13 32 32 H 1.08994 * 109.47343 * 60.00208 * 18 17 14 33 33 H 1.09002 * 109.46911 * 179.97438 * 18 17 14 34 34 H 1.09004 * 109.47053 * 299.99410 * 18 17 14 35 35 H 1.08998 * 109.47619 * 59.99890 * 19 17 14 36 36 H 1.08999 * 109.47020 * 180.02562 * 19 17 14 37 37 H 1.09001 * 109.47586 * 299.99857 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.4427 -1.1869 6 1 5.1307 0.9198 -1.2673 7 6 3.6725 2.1150 -2.2859 8 7 2.8352 3.1155 -2.1116 9 14 4.1595 1.5949 -4.0127 10 1 5.3649 2.3518 -4.4362 11 1 4.4585 0.1403 -4.0257 12 1 3.0423 1.8789 -4.9489 13 6 4.2380 1.4423 1.2677 14 6 4.4307 2.8830 1.7456 15 1 3.6566 3.5870 1.4405 16 6 5.8643 3.4082 1.8458 17 6 5.0748 3.0919 3.1177 18 6 4.5832 4.2734 3.9562 19 6 5.4763 1.8443 3.9070 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8932 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.4745 3.5855 -2.8796 28 1 3.6725 0.8845 2.0142 29 1 5.2117 0.9737 1.1246 30 1 6.6701 2.7275 1.5709 31 1 6.0335 4.4581 1.6065 32 1 3.5171 4.1609 4.1527 33 1 5.1257 4.2989 4.9013 34 1 4.7565 5.2020 3.4123 35 1 6.2023 1.2689 3.3327 36 1 5.9185 2.1424 4.8576 37 1 4.5936 1.2325 4.0934 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722875684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = 21.429402 kcal Electronic energy + Delta-G solvation = -14633.427866 eV Core-core repulsion = 12411.470100 eV Total energy + Delta-G solvation = -2221.957766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.13359 -35.64964 -32.33250 -31.11515 -28.76373 -27.32903 -25.71653 -25.45967 -22.05569 -20.68199 -19.53303 -17.94672 -16.63531 -15.05291 -14.27782 -14.06517 -13.95501 -13.68330 -13.28295 -12.88339 -12.53278 -12.24930 -12.02720 -11.65838 -11.48206 -11.30438 -10.99468 -10.81434 -10.77464 -10.71275 -10.45763 -10.19649 -10.01997 -9.81712 -9.43136 -9.03543 -8.79890 -8.39021 -6.52737 -5.71382 -3.22810 3.39478 3.47259 3.50986 4.37886 4.55856 5.22333 5.29932 5.38717 5.50070 5.59678 5.74970 5.90407 5.93321 5.98537 6.03529 6.23486 6.24874 6.27258 6.37217 6.38885 6.50337 6.56782 6.57958 6.66063 6.72029 6.76344 6.80967 6.95404 7.01504 7.25370 7.34994 7.82829 7.90041 8.57940 9.26981 9.91591 10.48438 11.28741 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.010224 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.956993 B = 2737.904773 C = 3410.081949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.144 3.856 4 N -0.583 5.583 5 C -0.252 4.252 6 H 0.059 0.941 7 C 0.009 3.991 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.290 1.290 13 C 0.177 3.823 14 C -0.131 4.131 15 H 0.099 0.901 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.108 4.108 19 C -0.107 4.107 20 H 0.050 0.950 21 H 0.039 0.961 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.020 0.980 26 H 0.096 0.904 27 H 0.252 0.748 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -1.639 8.557 8.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.302 5.302 5 C -0.382 4.382 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.214 1.214 11 H -0.205 1.205 12 H -0.216 1.216 13 C 0.050 3.950 14 C -0.152 4.152 15 H 0.117 0.883 16 C -0.204 4.204 17 C -0.156 4.156 18 C -0.165 4.165 19 C -0.164 4.164 20 H 0.069 0.931 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.598 -1.542 8.426 8.586 hybrid contribution 0.257 -0.026 -1.007 1.039 sum 0.855 -1.568 7.419 7.631 Atomic orbital electron populations 1.21696 0.97643 0.99857 1.01047 1.22076 0.93543 1.01794 1.00541 1.20976 0.83515 0.92259 1.01497 1.43914 1.00942 1.84766 1.00593 1.19012 1.05825 1.25819 0.87513 0.92294 1.25025 1.00175 0.95188 0.98682 1.70021 1.34641 1.18971 1.29265 0.86487 0.77611 0.78724 0.85143 1.21440 1.20450 1.21574 1.20514 0.95557 0.90796 0.88115 1.23519 0.95219 1.01680 0.94781 0.88308 1.23081 0.96162 1.00888 1.00295 1.21617 1.06781 0.97302 0.89912 1.21272 1.00403 0.96311 0.98521 1.21232 1.00636 0.95865 0.98634 0.93118 0.94224 0.93683 0.92531 0.94225 0.96183 0.88689 0.93763 0.94547 0.93799 0.89671 0.90151 0.92814 0.93118 0.92958 0.92695 0.93258 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.14 -2.87 6.26 -26.73 -0.17 -3.04 16 3 C 0.14 3.42 5.31 -4.04 -0.02 3.40 16 4 N -0.58 -14.61 2.45 -173.23 -0.42 -15.03 16 5 C -0.25 -6.93 9.45 -15.06 -0.14 -7.07 16 6 H 0.06 1.63 7.94 -52.48 -0.42 1.21 16 7 C 0.01 0.25 4.91 -17.43 -0.09 0.16 16 8 N -0.89 -25.60 11.42 55.49 0.63 -24.97 16 9 Si 0.89 21.77 29.62 -169.99 -5.04 16.74 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.18 3.80 5.03 -4.04 -0.02 3.78 16 14 C -0.13 -2.65 5.73 -90.61 -0.52 -3.17 16 15 H 0.10 2.28 8.14 -51.93 -0.42 1.86 16 16 C -0.17 -3.06 9.47 -26.73 -0.25 -3.31 16 17 C -0.16 -2.54 2.70 -154.51 -0.42 -2.96 16 18 C -0.11 -1.55 9.85 37.16 0.37 -1.18 16 19 C -0.11 -1.51 8.86 37.16 0.33 -1.19 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 26 H 0.10 2.56 5.38 -51.93 -0.28 2.28 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.04 0.73 7.72 -51.93 -0.40 0.33 16 29 H 0.04 0.94 7.75 -51.93 -0.40 0.54 16 30 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 31 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.63 7.92 -51.93 -0.41 0.21 16 34 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 35 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.05 0.61 7.92 -51.93 -0.41 0.19 16 37 H 0.05 0.77 7.83 -51.93 -0.41 0.37 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -28.29 299.93 -7.76 -36.06 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.89 Total: -0.63 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -0.56 Total: -16.69 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.21 Total: -40.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.04 Total: 16.74 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.29 -7.76 -36.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722875684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.487 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds