Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 N 1.46499 * 109.46986 * 120.00035 * 2 1 3 5 5 C 1.36934 * 120.00104 * 300.21283 * 4 2 1 6 6 H 1.07999 * 119.99986 * 352.27481 * 5 4 2 7 7 C 1.38812 * 119.99880 * 172.27561 * 5 4 2 8 8 N 1.31617 * 120.00191 * 335.66914 * 7 5 4 9 9 Si 1.86800 * 120.00092 * 155.67489 * 7 5 4 10 10 H 1.48498 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47264 * 119.99694 * 9 7 5 12 12 H 1.48498 * 109.47318 * 239.99832 * 9 7 5 13 13 C 1.46507 * 120.00001 * 120.21902 * 4 2 1 14 14 C 1.53008 * 109.46681 * 269.99873 * 13 4 2 15 15 H 1.08998 * 115.56237 * 330.68786 * 14 13 4 16 16 C 1.52995 * 117.49890 * 116.37693 * 14 13 4 17 17 C 1.52994 * 117.49758 * 185.00043 * 14 13 4 18 18 C 1.52997 * 117.50034 * 145.02258 * 17 14 13 19 19 C 1.53004 * 117.51922 * 359.97438 * 17 14 13 20 20 H 1.08996 * 109.47395 * 305.48008 * 1 2 3 21 21 H 1.09006 * 109.46900 * 65.47964 * 1 2 3 22 22 H 1.09004 * 109.47248 * 185.47342 * 1 2 3 23 23 H 1.09003 * 109.47289 * 240.00428 * 2 1 3 24 24 H 1.09001 * 109.47524 * 176.63537 * 3 2 1 25 25 H 1.09001 * 109.47254 * 296.63872 * 3 2 1 26 26 H 1.09005 * 109.46678 * 56.63775 * 3 2 1 27 27 H 0.96994 * 120.00235 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47276 * 149.99889 * 13 4 2 29 29 H 1.09007 * 109.47168 * 29.99416 * 13 4 2 30 30 H 1.09005 * 117.49726 * 0.02562 * 16 14 13 31 31 H 1.09000 * 117.51982 * 214.97299 * 16 14 13 32 32 H 1.09005 * 109.47215 * 180.02562 * 18 17 14 33 33 H 1.08998 * 109.47566 * 60.00784 * 18 17 14 34 34 H 1.09000 * 109.46606 * 300.00786 * 18 17 14 35 35 H 1.08997 * 109.46963 * 180.12405 * 19 17 14 36 36 H 1.09007 * 109.46986 * 300.12214 * 19 17 14 37 37 H 1.08999 * 109.47065 * 60.11873 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6838 -0.2254 2.4399 6 1 1.1670 0.7173 2.5428 7 6 2.0092 -0.9654 3.5683 8 7 2.1844 -2.2664 3.4742 9 14 2.1980 -0.1148 5.2207 10 1 1.9515 1.3407 5.0591 11 1 1.2181 -0.6794 6.1830 12 1 3.5751 -0.3292 5.7333 13 6 2.8645 -1.8790 1.0618 14 6 1.9837 -3.1292 1.0118 15 1 1.0380 -3.0600 1.5493 16 6 2.0066 -3.9585 -0.2737 17 6 2.6865 -4.4880 0.9906 18 6 2.0080 -5.6458 1.7254 19 6 4.2162 -4.4933 1.0203 20 1 -0.3634 0.5964 0.8368 21 1 -0.3633 0.4265 -0.9350 22 1 -0.3634 -1.0230 0.0980 23 1 1.8933 -0.5138 -0.8900 24 1 3.1283 1.4431 0.0603 25 1 1.7267 1.9387 -0.9186 26 1 1.6283 1.9734 0.8584 27 1 2.4114 -2.7836 4.2627 28 1 3.5387 -1.9434 1.9158 29 1 3.4472 -1.8081 0.1432 30 1 2.6495 -3.6138 -1.0836 31 1 1.0762 -4.4352 -0.5821 32 1 2.6166 -6.5448 1.6273 33 1 1.0237 -5.8240 1.2925 34 1 1.9007 -5.3933 2.7803 35 1 4.5765 -5.5217 0.9987 36 1 4.5984 -3.9561 0.1522 37 1 4.5636 -4.0056 1.9312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722875886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = 36.855498 kcal Electronic energy + Delta-G solvation = -15137.416382 eV Core-core repulsion = 12916.127541 eV Total energy + Delta-G solvation = -2221.288840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.87256 -35.92349 -32.38464 -29.83261 -28.22221 -26.91803 -26.21090 -25.50132 -22.98758 -19.98610 -19.49190 -17.63981 -16.21211 -15.13878 -14.06202 -13.72280 -13.57180 -13.55691 -12.97673 -12.47332 -12.43093 -11.85960 -11.57246 -11.42163 -11.30610 -11.19204 -11.07929 -10.70706 -10.54111 -10.49972 -10.38559 -10.21252 -9.88256 -9.75861 -9.52165 -8.78391 -8.33584 -8.13768 -6.76274 -5.63798 -2.94050 3.44121 3.53703 3.54683 4.58120 4.88004 5.40252 5.45737 5.69483 5.73609 5.93918 5.99636 6.04928 6.20865 6.31883 6.34121 6.38619 6.39665 6.49689 6.59219 6.63538 6.66178 6.73963 6.75565 6.79077 6.88563 6.97581 7.14499 7.17285 7.22311 7.46391 7.65607 7.88668 7.96456 8.45752 9.34791 10.00484 10.45641 11.39583 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.014597 C = 0.009947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.611623 B = 1917.768139 C = 2814.268569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 C -0.153 4.153 4 N -0.594 5.594 5 C -0.241 4.241 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.889 5.889 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.292 1.292 13 C 0.207 3.793 14 C -0.061 4.061 15 H 0.108 0.892 16 C -0.220 4.220 17 C -0.134 4.134 18 C -0.101 4.101 19 C -0.102 4.102 20 H 0.051 0.949 21 H 0.032 0.968 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.248 0.752 28 H 0.083 0.917 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -1.611 -5.728 6.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.213 4.213 4 N -0.315 5.315 5 C -0.371 4.371 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.219 1.219 13 C 0.081 3.919 14 C -0.082 4.082 15 H 0.126 0.874 16 C -0.258 4.258 17 C -0.135 4.135 18 C -0.159 4.159 19 C -0.160 4.160 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.025 0.975 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.840 -1.702 -5.596 5.909 hybrid contribution -0.049 0.234 0.968 0.997 sum 0.791 -1.468 -4.628 4.919 Atomic orbital electron populations 1.22190 0.98412 1.01252 0.99231 1.20265 0.92202 0.91851 0.89717 1.22191 1.00746 0.98659 0.99668 1.44282 1.56785 1.29419 1.01056 1.19145 1.33223 1.02041 0.82642 0.91010 1.24670 1.03042 0.95158 0.97114 1.70262 1.52145 1.03338 1.27742 0.86457 0.77366 0.79226 0.85254 1.20780 1.22324 1.21922 1.20355 0.91181 0.83295 0.97042 1.23093 1.01680 0.90648 0.92781 0.87388 1.23436 1.01221 1.08632 0.92486 1.21249 0.93828 0.98262 1.00113 1.21192 0.98386 0.95605 1.00676 1.21179 0.93628 0.99729 1.01418 0.93027 0.94918 0.93184 0.93256 0.93463 0.94592 0.92881 0.94115 0.89856 0.97545 0.90829 0.91100 0.94180 0.93894 0.92015 0.94142 0.93619 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.07 37.15 0.34 -2.60 16 2 C 0.17 3.43 3.36 -67.93 -0.23 3.20 16 3 C -0.15 -2.85 9.11 37.16 0.34 -2.51 16 4 N -0.59 -14.28 2.47 -165.65 -0.41 -14.69 16 5 C -0.24 -6.34 8.53 -15.06 -0.13 -6.47 16 6 H 0.07 1.90 6.92 -52.49 -0.36 1.53 16 7 C 0.00 -0.07 4.93 -17.43 -0.09 -0.16 16 8 N -0.89 -23.92 8.74 55.49 0.48 -23.44 16 9 Si 0.89 21.49 29.62 -169.99 -5.03 16.46 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 C 0.21 4.83 4.26 -4.03 -0.02 4.81 16 14 C -0.06 -1.36 4.05 -90.62 -0.37 -1.73 16 15 H 0.11 2.81 7.51 -51.93 -0.39 2.42 16 16 C -0.22 -4.22 9.47 -26.73 -0.25 -4.47 16 17 C -0.13 -2.60 2.70 -154.51 -0.42 -3.02 16 18 C -0.10 -1.83 9.85 37.16 0.37 -1.47 16 19 C -0.10 -1.83 8.86 37.16 0.33 -1.50 16 20 H 0.05 1.04 7.62 -51.93 -0.40 0.65 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.05 0.97 7.80 -51.93 -0.40 0.57 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.04 7.26 -51.93 -0.38 0.66 16 27 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.08 2.17 5.85 -51.93 -0.30 1.87 16 29 H 0.01 0.14 7.65 -51.93 -0.40 -0.26 16 30 H 0.07 1.35 7.94 -51.93 -0.41 0.93 16 31 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 32 H 0.04 0.63 7.92 -51.93 -0.41 0.22 16 33 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.63 7.92 -51.93 -0.41 0.22 16 36 H 0.04 0.78 7.90 -51.93 -0.41 0.37 16 37 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -26.30 291.42 -7.45 -33.75 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.76 Total: -0.57 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.13 Total: -15.91 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.08 Total: -38.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.30 -7.45 -33.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722875886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.607 kcal (2) G-P(sol) polarization free energy of solvation -26.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds