Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 N 1.46499 * 109.46986 * 120.00035 * 2 1 3 5 5 C 1.36934 * 120.00104 * 300.21283 * 4 2 1 6 6 H 1.07999 * 119.99986 * 352.27481 * 5 4 2 7 7 C 1.38812 * 119.99880 * 172.27561 * 5 4 2 8 8 N 1.31617 * 120.00191 * 335.66914 * 7 5 4 9 9 Si 1.86800 * 120.00092 * 155.67489 * 7 5 4 10 10 H 1.48498 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47264 * 119.99694 * 9 7 5 12 12 H 1.48498 * 109.47318 * 239.99832 * 9 7 5 13 13 C 1.46507 * 120.00001 * 120.21902 * 4 2 1 14 14 C 1.53008 * 109.46681 * 269.99873 * 13 4 2 15 15 H 1.08998 * 115.56237 * 330.68786 * 14 13 4 16 16 C 1.52995 * 117.49890 * 116.37693 * 14 13 4 17 17 C 1.52994 * 117.49758 * 185.00043 * 14 13 4 18 18 C 1.52997 * 117.50034 * 145.02258 * 17 14 13 19 19 C 1.53004 * 117.51922 * 359.97438 * 17 14 13 20 20 H 1.08996 * 109.47395 * 305.48008 * 1 2 3 21 21 H 1.09006 * 109.46900 * 65.47964 * 1 2 3 22 22 H 1.09004 * 109.47248 * 185.47342 * 1 2 3 23 23 H 1.09003 * 109.47289 * 240.00428 * 2 1 3 24 24 H 1.09001 * 109.47524 * 176.63537 * 3 2 1 25 25 H 1.09001 * 109.47254 * 296.63872 * 3 2 1 26 26 H 1.09005 * 109.46678 * 56.63775 * 3 2 1 27 27 H 0.96994 * 120.00235 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47276 * 149.99889 * 13 4 2 29 29 H 1.09007 * 109.47168 * 29.99416 * 13 4 2 30 30 H 1.09005 * 117.49726 * 0.02562 * 16 14 13 31 31 H 1.09000 * 117.51982 * 214.97299 * 16 14 13 32 32 H 1.09005 * 109.47215 * 180.02562 * 18 17 14 33 33 H 1.08998 * 109.47566 * 60.00784 * 18 17 14 34 34 H 1.09000 * 109.46606 * 300.00786 * 18 17 14 35 35 H 1.08997 * 109.46963 * 180.12405 * 19 17 14 36 36 H 1.09007 * 109.46986 * 300.12214 * 19 17 14 37 37 H 1.08999 * 109.47065 * 60.11873 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6838 -0.2254 2.4399 6 1 1.1670 0.7173 2.5428 7 6 2.0092 -0.9654 3.5683 8 7 2.1844 -2.2664 3.4742 9 14 2.1980 -0.1148 5.2207 10 1 1.9515 1.3407 5.0591 11 1 1.2181 -0.6794 6.1830 12 1 3.5751 -0.3292 5.7333 13 6 2.8645 -1.8790 1.0618 14 6 1.9837 -3.1292 1.0118 15 1 1.0380 -3.0600 1.5493 16 6 2.0066 -3.9585 -0.2737 17 6 2.6865 -4.4880 0.9906 18 6 2.0080 -5.6458 1.7254 19 6 4.2162 -4.4933 1.0203 20 1 -0.3634 0.5964 0.8368 21 1 -0.3633 0.4265 -0.9350 22 1 -0.3634 -1.0230 0.0980 23 1 1.8933 -0.5138 -0.8900 24 1 3.1283 1.4431 0.0603 25 1 1.7267 1.9387 -0.9186 26 1 1.6283 1.9734 0.8584 27 1 2.4114 -2.7836 4.2627 28 1 3.5387 -1.9434 1.9158 29 1 3.4472 -1.8081 0.1432 30 1 2.6495 -3.6138 -1.0836 31 1 1.0762 -4.4352 -0.5821 32 1 2.6166 -6.5448 1.6273 33 1 1.0237 -5.8240 1.2925 34 1 1.9007 -5.3933 2.7803 35 1 4.5765 -5.5217 0.9987 36 1 4.5984 -3.9561 0.1522 37 1 4.5636 -4.0056 1.9312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722875886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = 24.827505 kcal Electronic energy + Delta-G solvation = -15137.937954 eV Core-core repulsion = 12916.127541 eV Total energy + Delta-G solvation = -2221.810413 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53281 -37.62257 -34.24439 -31.62440 -29.85241 -28.40962 -27.74493 -27.33267 -24.80286 -21.64556 -21.24475 -19.25195 -18.13296 -16.98052 -15.88139 -15.50062 -15.28757 -15.12350 -14.50006 -14.16161 -13.98544 -13.46528 -13.21207 -13.04918 -12.88044 -12.83059 -12.69553 -12.59013 -12.26606 -12.17000 -12.06310 -11.88806 -11.64510 -11.54204 -11.28434 -10.57374 -10.08340 -9.87323 -8.66874 -7.65825 -4.95927 1.47193 1.52755 1.58960 2.60815 3.26282 3.41191 3.69305 4.16310 4.26908 4.34099 4.37598 4.52082 4.62889 4.75310 4.86327 4.91517 4.93310 4.95941 5.03542 5.12435 5.16024 5.17001 5.18087 5.19956 5.33934 5.48974 5.56235 5.58460 5.68967 5.72988 5.78570 5.91382 6.08151 6.46944 7.33931 8.09217 8.48740 9.34168 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.014597 C = 0.009947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.611623 B = 1917.768139 C = 2814.268569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.158 3.842 3 C -0.144 4.144 4 N -0.608 5.608 5 C -0.242 4.242 6 H 0.066 0.934 7 C -0.047 4.047 8 N -0.899 5.899 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.302 1.302 12 H -0.298 1.298 13 C 0.216 3.784 14 C -0.081 4.081 15 H 0.064 0.936 16 C -0.196 4.196 17 C -0.133 4.133 18 C -0.098 4.098 19 C -0.098 4.098 20 H 0.035 0.965 21 H 0.067 0.933 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.240 0.760 28 H 0.050 0.950 29 H 0.019 0.981 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -1.756 -7.364 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.330 5.330 5 C -0.372 4.372 6 H 0.084 0.916 7 C -0.243 4.243 8 N -0.545 5.545 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.231 1.231 12 H -0.225 1.225 13 C 0.091 3.909 14 C -0.102 4.102 15 H 0.083 0.917 16 C -0.233 4.233 17 C -0.133 4.133 18 C -0.155 4.155 19 C -0.155 4.155 20 H 0.054 0.946 21 H 0.086 0.914 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.086 -1.831 -7.252 7.558 hybrid contribution -0.154 0.297 1.424 1.463 sum 0.931 -1.533 -5.827 6.097 Atomic orbital electron populations 1.22063 0.97530 1.00035 1.00423 1.20533 0.92901 0.92733 0.88720 1.22074 1.00187 0.97296 1.00750 1.44488 1.57035 1.29982 1.01496 1.19242 1.32520 1.01592 0.83876 0.91626 1.25194 1.04031 0.95779 0.99287 1.70417 1.52888 1.03744 1.27488 0.85660 0.76492 0.78531 0.82506 1.20348 1.23061 1.22510 1.20146 0.90940 0.83848 0.95996 1.22594 1.00230 0.91849 0.95542 0.91728 1.23426 1.01712 1.06401 0.91782 1.21447 0.94872 0.96870 1.00151 1.21165 0.99165 0.96181 0.99034 1.21144 0.92397 1.01245 1.00683 0.94575 0.91392 0.95067 0.92051 0.94048 0.91167 0.94405 0.95019 0.93175 0.96296 0.89329 0.90083 0.91488 0.93411 0.94283 0.91565 0.92794 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.07 71.98 0.65 -4.63 16 2 C 0.16 6.23 3.36 44.99 0.15 6.38 16 3 C -0.14 -5.07 9.11 71.98 0.66 -4.42 16 4 N -0.61 -29.27 2.47 -678.00 -1.67 -30.95 16 5 C -0.24 -12.89 8.53 84.03 0.72 -12.18 16 6 H 0.07 3.51 6.92 -2.91 -0.02 3.49 16 7 C -0.05 -2.57 4.93 84.86 0.42 -2.16 16 8 N -0.90 -49.77 8.74 21.65 0.19 -49.58 16 9 Si 0.94 45.13 29.62 68.60 2.03 47.17 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 13 C 0.22 10.13 4.26 86.38 0.37 10.49 16 14 C -0.08 -3.61 4.05 -10.79 -0.04 -3.65 16 15 H 0.06 3.46 7.51 -2.39 -0.02 3.44 16 16 C -0.20 -7.09 9.47 30.59 0.29 -6.80 16 17 C -0.13 -5.00 2.70 -52.18 -0.14 -5.14 16 18 C -0.10 -3.43 9.85 71.98 0.71 -2.72 16 19 C -0.10 -3.33 8.86 71.98 0.64 -2.69 16 20 H 0.04 1.43 7.62 -2.39 -0.02 1.41 16 21 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.06 2.27 7.80 -2.39 -0.02 2.25 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.42 7.26 -2.38 -0.02 1.41 16 27 H 0.24 13.28 8.31 -92.71 -0.77 12.51 16 28 H 0.05 2.67 5.85 -2.39 -0.01 2.65 16 29 H 0.02 0.82 7.65 -2.38 -0.02 0.80 16 30 H 0.09 2.95 7.94 -2.38 -0.02 2.93 16 31 H 0.08 2.76 8.05 -2.39 -0.02 2.75 16 32 H 0.07 1.95 7.92 -2.38 -0.02 1.93 16 33 H 0.05 1.58 7.90 -2.39 -0.02 1.57 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.90 7.92 -2.39 -0.02 1.88 16 36 H 0.05 1.72 7.90 -2.38 -0.02 1.70 16 37 H 0.04 1.50 7.84 -2.39 -0.02 1.48 16 Total: -1.00 -56.74 291.42 5.96 -50.78 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.00 Total: 10.09 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 4.41 Total: -27.50 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.49 Total: -80.53 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.17 kcal Total: -56.74 5.96 -50.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722875886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.608 kcal (2) G-P(sol) polarization free energy of solvation -56.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds