Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 F 1.39897 * 109.47422 * 239.99935 * 2 1 3 5 5 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 6 6 N 1.46496 * 109.47535 * 185.00041 * 5 2 1 7 7 C 1.35047 * 126.40095 * 265.02501 * 6 5 2 8 8 N 1.30496 * 108.70378 * 179.97438 * 7 6 5 9 9 C 1.34128 * 109.25482 * 0.02562 * 8 7 6 10 10 C 1.34673 * 108.02097 * 359.72810 * 9 8 7 11 11 C 1.50699 * 126.59157 * 180.28193 * 10 9 8 12 12 C 1.50692 * 109.47067 * 85.16780 * 11 10 9 13 13 H 1.08001 * 120.00161 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00013 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00233 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00240 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46963 * 59.99855 * 16 14 12 18 18 H 1.48493 * 109.47283 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46911 * 299.99978 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 1.08998 * 109.47565 * 305.00629 * 5 2 1 24 24 H 1.09000 * 109.46738 * 65.00110 * 5 2 1 25 25 H 1.08001 * 125.64332 * 359.97106 * 7 6 5 26 26 H 1.08001 * 125.99201 * 180.02562 * 9 8 7 27 27 H 1.09001 * 109.47215 * 205.17174 * 11 10 9 28 28 H 1.09001 * 109.47225 * 325.16452 * 11 10 9 29 29 H 0.96995 * 120.00080 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3110 7 6 4.3878 -1.5293 0.8585 8 7 5.5943 -1.0880 1.0879 9 6 5.5207 0.1085 1.6895 10 6 4.2192 0.4233 1.8331 11 6 3.6617 1.6790 2.4523 12 6 3.5998 2.7673 1.4119 13 1 3.9313 2.5697 0.4032 14 6 3.1198 4.0155 1.7476 15 7 2.7165 4.2564 2.9760 16 14 3.0422 5.3645 0.4577 17 1 2.1650 4.9313 -0.6594 18 1 2.4919 6.6015 1.0676 19 1 4.4078 5.6328 -0.0606 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7714 1.2056 25 1 4.1402 -2.4679 0.3851 26 1 6.3584 0.7155 1.9996 27 1 2.6593 1.4825 2.8327 28 1 4.3057 1.9965 3.2724 29 1 2.3791 5.1346 3.2123 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = -8.251244 kcal Electronic energy + Delta-G solvation = -14213.820619 eV Core-core repulsion = 11665.856493 eV Total energy + Delta-G solvation = -2547.964126 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.102 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.38710 -41.26338 -34.61587 -33.41244 -31.33286 -30.48155 -26.58495 -26.20055 -23.09302 -21.73166 -20.64461 -19.05875 -16.74126 -16.49751 -16.03332 -15.48967 -14.61256 -14.58233 -13.89263 -13.48808 -12.89414 -12.62730 -12.38186 -12.28205 -12.16045 -11.90132 -11.46590 -11.11604 -10.87425 -10.76875 -10.56549 -10.05043 -9.60522 -9.16816 -8.84409 -8.53644 -7.41347 -6.15948 -4.21374 2.84589 3.24551 3.29742 3.34087 3.39451 3.95490 4.35349 4.61497 4.78597 4.98243 5.09006 5.20420 5.33698 5.36992 5.56074 5.75506 5.86914 6.08662 6.18337 6.37758 6.58154 6.83159 7.31170 7.59588 7.60089 7.79065 7.92146 8.18583 8.82557 8.83954 9.43824 10.92605 Molecular weight = 212.10amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.012036 C = 0.009523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.114519 B = 2325.842626 C = 2939.489118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.067 3.933 3 H 0.111 0.889 4 F -0.214 7.214 5 C 0.089 3.911 6 N -0.460 5.460 7 C 0.151 3.849 8 N -0.498 5.498 9 C -0.061 4.061 10 C 0.036 3.964 11 C 0.085 3.915 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.191 0.809 26 H 0.162 0.838 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 -7.806 -2.901 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.030 3.970 3 H 0.129 0.871 4 F -0.195 7.195 5 C -0.035 4.035 6 N -0.145 5.145 7 C -0.130 4.130 8 N -0.216 5.216 9 C -0.206 4.206 10 C -0.078 4.078 11 C 0.047 3.953 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.200 1.200 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.126 0.874 24 H 0.111 0.889 25 H 0.208 0.792 26 H 0.179 0.821 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.828 -8.113 -3.007 9.908 hybrid contribution -0.824 1.167 -0.583 1.543 sum -5.652 -6.946 -3.590 9.648 Atomic orbital electron populations 1.22284 0.93616 1.03033 1.04225 1.22106 0.94974 0.98566 0.81374 0.87095 1.92795 1.90436 1.83323 1.52993 1.22308 0.79062 1.02302 0.99824 1.45270 1.06283 1.16916 1.46057 1.24548 0.84492 0.97682 1.06273 1.70113 1.22180 1.12068 1.17283 1.21869 0.95364 0.95291 1.08064 1.22371 0.92149 0.91854 1.01422 1.17845 0.96115 0.85598 0.95763 1.20996 1.42918 0.95225 0.96294 0.92487 1.24979 0.95109 0.98437 0.95450 1.69930 1.42464 1.22833 1.17800 0.86617 0.78717 0.81055 0.81490 1.20210 1.21121 1.19955 0.91755 0.91064 0.90085 0.87414 0.88884 0.79192 0.82102 0.95813 0.93811 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.65 37.16 0.36 -1.71 15 2 C 0.07 1.04 4.22 -26.73 -0.11 0.93 15 3 H 0.11 2.11 7.77 -51.93 -0.40 1.71 15 4 F -0.21 -3.69 17.06 2.25 0.04 -3.65 15 5 C 0.09 1.34 5.66 -4.04 -0.02 1.31 15 6 N -0.46 -8.73 2.74 -114.00 -0.31 -9.04 15 7 C 0.15 2.82 12.56 -90.38 -1.13 1.68 15 8 N -0.50 -10.67 11.25 -14.66 -0.16 -10.83 15 9 C -0.06 -1.35 11.79 -17.81 -0.21 -1.56 15 10 C 0.04 0.81 6.14 -81.60 -0.50 0.30 15 11 C 0.08 2.07 5.31 -29.04 -0.15 1.92 15 12 C -0.52 -13.69 8.73 -34.44 -0.30 -13.99 15 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 15 N -0.89 -24.87 13.29 55.43 0.74 -24.14 15 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 15 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 20 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.11 1.57 7.30 -51.93 -0.38 1.19 15 24 H 0.09 1.09 8.13 -51.93 -0.42 0.67 15 25 H 0.19 2.79 8.06 -52.49 -0.42 2.36 15 26 H 0.16 3.38 8.06 -52.49 -0.42 2.96 15 27 H 0.02 0.58 7.21 -51.93 -0.37 0.21 15 28 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 259.85 15.07 3.92 3.92 Total: -1.00 -30.21 259.85 -6.64 -36.85 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.66 Total: 0.68 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.18 Total: -9.54 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.26 Total: -44.00 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.21 -6.64 -36.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.597 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds