Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.85421 * 2 1 4 4 O 1.21293 * 119.99482 * 123.79054 * 3 2 1 5 5 N 1.34777 * 120.00290 * 303.79491 * 3 2 1 6 6 C 1.37092 * 119.99729 * 180.27555 * 5 3 2 7 7 H 1.08002 * 120.00496 * 359.72414 * 6 5 3 8 8 C 1.38958 * 120.00096 * 179.72242 * 6 5 3 9 9 N 1.31414 * 119.99347 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47438 * 59.99738 * 10 8 6 12 12 H 1.48504 * 109.46883 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46866 * 299.99617 * 10 8 6 14 14 C 1.54476 * 111.00106 * 236.19134 * 2 1 3 15 15 N 1.46761 * 105.47467 * 216.44702 * 14 2 1 16 16 C 1.34421 * 111.29970 * 17.02083 * 15 14 2 17 17 O 1.21276 * 124.94388 * 179.55940 * 16 15 14 18 18 C 1.51283 * 110.11566 * 359.58755 * 16 15 14 19 19 H 1.09000 * 109.47240 * 59.29733 * 1 2 3 20 20 H 1.09004 * 109.47023 * 179.29683 * 1 2 3 21 21 H 1.09001 * 109.47112 * 299.29275 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 23 23 H 0.97004 * 119.99790 * 179.97438 * 9 8 6 24 24 H 1.09002 * 110.24859 * 335.45008 * 14 2 1 25 25 H 1.09009 * 110.24741 * 97.44569 * 14 2 1 26 26 H 0.97005 * 124.35046 * 197.03048 * 15 14 2 27 27 H 1.08995 * 110.48831 * 225.07540 * 18 16 15 28 28 H 1.08996 * 110.60053 * 102.48198 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 8 2.8284 1.7670 0.8730 5 7 1.6998 2.2692 -0.9700 6 6 2.1923 3.5486 -0.9730 7 1 2.8707 3.8680 -0.1957 8 6 1.8187 4.4345 -1.9763 9 7 0.9937 4.0457 -2.9224 10 14 2.4904 6.1775 -1.9809 11 1 3.9721 6.1369 -2.0716 12 1 1.9425 6.9160 -3.1471 13 1 2.0898 6.8657 -0.7273 14 6 2.0837 -0.8024 -1.1983 15 7 3.2862 -1.4771 -0.6957 16 6 3.3093 -1.4970 0.6482 17 8 4.1851 -1.9988 1.3205 18 6 2.0834 -0.8031 1.1999 19 1 -0.3634 0.5247 -0.8836 20 1 -0.3633 -1.0276 -0.0126 21 1 -0.3633 0.5028 0.8963 22 1 1.0908 1.9822 -1.6683 23 1 0.7326 4.6642 -3.6225 24 1 1.3504 -1.5370 -1.5315 25 1 2.3426 -0.1294 -2.0157 26 1 3.9758 -1.8595 -1.2607 27 1 2.3587 -0.1321 2.0136 28 1 1.3499 -1.5337 1.5408 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306549975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -82.015677 kcal Electronic energy + Delta-G solvation = -14310.391625 eV Core-core repulsion = 11746.856044 eV Total energy + Delta-G solvation = -2563.535581 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.40954 -38.05145 -35.90612 -34.07662 -32.50092 -31.21440 -28.05658 -25.92066 -25.15629 -22.08236 -20.29781 -18.67436 -18.07496 -16.90949 -16.35221 -15.09774 -14.68218 -14.49384 -14.16439 -13.92889 -13.37712 -13.16296 -12.65079 -12.43985 -11.97813 -11.74131 -11.53176 -11.18700 -11.06265 -10.71492 -10.48469 -10.27665 -9.59772 -9.51278 -8.95162 -8.43620 -8.07126 -6.51190 -3.92142 2.94052 3.14408 3.21600 3.26072 3.65061 3.71778 4.08674 4.61405 4.68069 4.73579 5.08857 5.19611 5.50207 5.63947 5.71844 5.77604 5.87850 6.05715 6.24485 6.32863 6.46987 7.04467 7.25128 7.46999 7.95284 8.48978 8.54844 9.07648 9.42247 9.92846 10.65943 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047805 B = 0.008557 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.577674 B = 3271.246461 C = 3443.179399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 C 0.450 3.550 4 O -0.587 6.587 5 N -0.553 5.553 6 C -0.304 4.304 7 H 0.103 0.897 8 C 0.026 3.974 9 N -0.899 5.899 10 Si 0.931 3.069 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.113 3.887 15 N -0.731 5.731 16 C 0.530 3.470 17 O -0.545 6.545 18 C -0.137 4.137 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.393 0.607 23 H 0.273 0.727 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.407 0.593 27 H 0.118 0.882 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -7.792 -0.595 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C 0.235 3.765 4 O -0.472 6.472 5 N -0.188 5.188 6 C -0.433 4.433 7 H 0.121 0.879 8 C -0.176 4.176 9 N -0.540 5.540 10 Si 0.758 3.242 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.198 1.198 14 C -0.012 4.012 15 N -0.386 5.386 16 C 0.317 3.683 17 O -0.423 6.423 18 C -0.177 4.177 19 H 0.088 0.912 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.227 0.773 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.245 0.755 27 H 0.136 0.864 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.957 -7.627 0.236 8.184 hybrid contribution 0.173 0.653 -0.933 1.151 sum -2.784 -6.975 -0.696 7.542 Atomic orbital electron populations 1.21760 0.91566 1.02113 1.03562 1.21629 0.97379 0.95119 0.95097 1.19358 0.86131 0.85966 0.85071 1.90542 1.39419 1.78098 1.39092 1.41800 1.41830 1.10992 1.24132 1.19694 1.25993 0.86693 1.10930 0.87897 1.25265 0.96599 1.00436 0.95322 1.69593 1.33602 1.37075 1.13697 0.85908 0.79184 0.81346 0.77770 1.19850 1.20895 1.19798 1.22212 0.86749 0.95608 0.96675 1.46163 1.24803 1.59889 1.07765 1.20873 0.87249 0.77707 0.82442 1.90692 1.40683 1.47980 1.62953 1.22302 0.96024 0.99734 0.99623 0.91228 0.91929 0.91407 0.77307 0.91668 0.90511 0.89686 0.75537 0.86408 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.35 37.16 0.31 -1.42 15 2 C -0.09 -1.44 0.85 -154.03 -0.13 -1.58 15 3 C 0.45 10.14 6.46 -10.98 -0.07 10.07 15 4 O -0.59 -15.74 15.10 5.55 0.08 -15.65 15 5 N -0.55 -13.20 5.10 -10.96 -0.06 -13.25 15 6 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 15 7 H 0.10 2.94 7.16 -52.49 -0.38 2.56 15 8 C 0.03 0.67 5.50 -17.46 -0.10 0.57 15 9 N -0.90 -23.30 13.05 55.50 0.72 -22.58 15 10 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 15 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 14 C 0.11 1.58 6.89 -3.13 -0.02 1.56 15 15 N -0.73 -11.08 6.24 -59.20 -0.37 -11.45 15 16 C 0.53 9.66 8.43 -10.86 -0.09 9.57 15 17 O -0.55 -11.77 18.03 5.56 0.10 -11.67 15 18 C -0.14 -2.24 5.76 -26.74 -0.15 -2.39 15 19 H 0.07 0.92 7.46 -51.93 -0.39 0.53 15 20 H 0.06 0.62 8.11 -51.93 -0.42 0.20 15 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.39 8.81 7.18 -40.82 -0.29 8.52 15 23 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 24 H 0.08 0.82 7.87 -51.93 -0.41 0.41 15 25 H 0.08 1.26 7.83 -51.92 -0.41 0.86 15 26 H 0.41 5.31 8.96 -40.82 -0.37 4.94 15 27 H 0.12 2.22 7.01 -51.93 -0.36 1.85 15 28 H 0.10 1.30 7.89 -51.93 -0.41 0.89 15 LS Contribution 246.24 15.07 3.71 3.71 Total: -1.00 -32.37 246.24 -4.22 -36.59 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -2.99 Total: 10.80 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.40 Total: 8.06 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.30 Total: -47.28 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: 0.18 Total: -27.32 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.37 -4.22 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306549975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.426 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds