Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.85421 * 2 1 4 4 O 1.21293 * 119.99482 * 123.79054 * 3 2 1 5 5 N 1.34777 * 120.00290 * 303.79491 * 3 2 1 6 6 C 1.37092 * 119.99729 * 180.27555 * 5 3 2 7 7 H 1.08002 * 120.00496 * 359.72414 * 6 5 3 8 8 C 1.38958 * 120.00096 * 179.72242 * 6 5 3 9 9 N 1.31414 * 119.99347 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47438 * 59.99738 * 10 8 6 12 12 H 1.48504 * 109.46883 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46866 * 299.99617 * 10 8 6 14 14 C 1.54476 * 111.00106 * 236.19134 * 2 1 3 15 15 N 1.46761 * 105.47467 * 216.44702 * 14 2 1 16 16 C 1.34421 * 111.29970 * 17.02083 * 15 14 2 17 17 O 1.21276 * 124.94388 * 179.55940 * 16 15 14 18 18 C 1.51283 * 110.11566 * 359.58755 * 16 15 14 19 19 H 1.09000 * 109.47240 * 59.29733 * 1 2 3 20 20 H 1.09004 * 109.47023 * 179.29683 * 1 2 3 21 21 H 1.09001 * 109.47112 * 299.29275 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 23 23 H 0.97004 * 119.99790 * 179.97438 * 9 8 6 24 24 H 1.09002 * 110.24859 * 335.45008 * 14 2 1 25 25 H 1.09009 * 110.24741 * 97.44569 * 14 2 1 26 26 H 0.97005 * 124.35046 * 197.03048 * 15 14 2 27 27 H 1.08995 * 110.48831 * 225.07540 * 18 16 15 28 28 H 1.08996 * 110.60053 * 102.48198 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 8 2.8284 1.7670 0.8730 5 7 1.6998 2.2692 -0.9700 6 6 2.1923 3.5486 -0.9730 7 1 2.8707 3.8680 -0.1957 8 6 1.8187 4.4345 -1.9763 9 7 0.9937 4.0457 -2.9224 10 14 2.4904 6.1775 -1.9809 11 1 3.9721 6.1369 -2.0716 12 1 1.9425 6.9160 -3.1471 13 1 2.0898 6.8657 -0.7273 14 6 2.0837 -0.8024 -1.1983 15 7 3.2862 -1.4771 -0.6957 16 6 3.3093 -1.4970 0.6482 17 8 4.1851 -1.9988 1.3205 18 6 2.0834 -0.8031 1.1999 19 1 -0.3634 0.5247 -0.8836 20 1 -0.3633 -1.0276 -0.0126 21 1 -0.3633 0.5028 0.8963 22 1 1.0908 1.9822 -1.6683 23 1 0.7326 4.6642 -3.6225 24 1 1.3504 -1.5370 -1.5315 25 1 2.3426 -0.1294 -2.0157 26 1 3.9758 -1.8595 -1.2607 27 1 2.3587 -0.1321 2.0136 28 1 1.3499 -1.5337 1.5408 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306549975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -108.311241 kcal Electronic energy + Delta-G solvation = -14311.531886 eV Core-core repulsion = 11746.856044 eV Total energy + Delta-G solvation = -2564.675843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.83891 -39.76167 -37.42103 -36.03617 -33.90450 -33.06711 -29.36979 -27.25747 -26.86337 -23.67509 -21.63715 -20.40303 -19.88023 -18.37068 -17.81134 -16.88211 -16.19816 -16.05024 -15.84558 -15.55481 -14.80148 -14.76360 -14.06110 -13.65778 -13.53449 -13.23890 -12.93004 -12.85358 -12.52533 -12.44143 -12.12844 -11.92147 -11.53227 -10.94147 -10.45982 -10.07861 -10.00495 -8.48889 -5.97237 1.38054 1.42363 1.51916 1.53870 1.98335 2.28311 2.43899 3.04366 3.14339 3.37630 3.47921 3.81064 4.20242 4.37511 4.59036 4.60961 4.80612 4.84871 5.01672 5.08546 5.36034 5.40693 5.80286 5.96825 5.97676 6.56517 7.09957 7.21540 7.52335 8.08174 8.67450 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047805 B = 0.008557 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.577674 B = 3271.246461 C = 3443.179399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C 0.445 3.555 4 O -0.637 6.637 5 N -0.556 5.556 6 C -0.340 4.340 7 H 0.074 0.926 8 C -0.003 4.003 9 N -0.911 5.911 10 Si 0.987 3.013 11 H -0.276 1.276 12 H -0.268 1.268 13 H -0.273 1.273 14 C 0.116 3.884 15 N -0.721 5.721 16 C 0.519 3.481 17 O -0.589 6.589 18 C -0.133 4.133 19 H 0.068 0.932 20 H 0.109 0.891 21 H 0.059 0.941 22 H 0.400 0.600 23 H 0.280 0.720 24 H 0.131 0.869 25 H 0.077 0.923 26 H 0.417 0.583 27 H 0.087 0.913 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 -8.649 -1.770 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C 0.232 3.768 4 O -0.525 6.525 5 N -0.192 5.192 6 C -0.470 4.470 7 H 0.092 0.908 8 C -0.204 4.204 9 N -0.551 5.551 10 Si 0.811 3.189 11 H -0.201 1.201 12 H -0.192 1.192 13 H -0.198 1.198 14 C -0.009 4.009 15 N -0.375 5.375 16 C 0.307 3.693 17 O -0.470 6.470 18 C -0.173 4.173 19 H 0.087 0.913 20 H 0.127 0.873 21 H 0.079 0.921 22 H 0.235 0.765 23 H 0.089 0.911 24 H 0.148 0.852 25 H 0.095 0.905 26 H 0.256 0.744 27 H 0.105 0.895 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.480 -8.492 -0.998 9.653 hybrid contribution 0.639 0.915 -0.570 1.254 sum -3.840 -7.577 -1.569 8.638 Atomic orbital electron populations 1.21797 0.88340 1.05081 1.03249 1.21593 0.99677 0.90806 0.96451 1.20514 0.84695 0.88192 0.83393 1.90515 1.41465 1.79790 1.40749 1.41788 1.42119 1.10453 1.24817 1.19605 1.27236 0.88754 1.11365 0.90771 1.25923 0.96495 1.03419 0.94594 1.69630 1.33563 1.38197 1.13736 0.85073 0.78354 0.77319 0.78116 1.20117 1.19214 1.19839 1.22408 0.87140 0.96358 0.94954 1.46174 1.25467 1.58881 1.07004 1.21229 0.87316 0.77471 0.83303 1.90664 1.42241 1.50074 1.64069 1.22335 0.96398 0.99935 0.98585 0.91266 0.87254 0.92144 0.76462 0.91075 0.85170 0.90478 0.74372 0.89455 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.35 71.98 0.60 -2.27 15 2 C -0.08 -2.49 0.85 -51.87 -0.04 -2.54 15 3 C 0.44 20.19 6.46 87.66 0.57 20.76 15 4 O -0.64 -35.42 15.10 -3.07 -0.05 -35.47 15 5 N -0.56 -26.76 5.10 -306.98 -1.56 -28.33 15 6 C -0.34 -18.70 9.68 84.04 0.81 -17.88 15 7 H 0.07 4.43 7.16 -2.91 -0.02 4.41 15 8 C 0.00 -0.17 5.50 84.93 0.47 0.30 15 9 N -0.91 -46.37 13.05 21.67 0.28 -46.08 15 10 Si 0.99 41.69 29.55 68.60 2.03 43.72 15 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 12 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 13 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 14 C 0.12 2.86 6.89 86.83 0.60 3.46 15 15 N -0.72 -20.35 6.24 -459.81 -2.87 -23.22 15 16 C 0.52 18.38 8.43 87.90 0.74 19.12 15 17 O -0.59 -25.53 18.03 -3.02 -0.05 -25.58 15 18 C -0.13 -4.12 5.76 30.59 0.18 -3.95 15 19 H 0.07 1.60 7.46 -2.39 -0.02 1.58 15 20 H 0.11 1.51 8.11 -2.38 -0.02 1.49 15 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.40 17.73 7.18 -92.71 -0.67 17.07 15 23 H 0.28 13.36 8.31 -92.71 -0.77 12.59 15 24 H 0.13 1.99 7.87 -2.39 -0.02 1.97 15 25 H 0.08 2.10 7.83 -2.38 -0.02 2.08 15 26 H 0.42 10.10 8.96 -92.70 -0.83 9.27 15 27 H 0.09 3.33 7.01 -2.39 -0.02 3.31 15 28 H 0.15 3.19 7.89 -2.39 -0.02 3.17 15 Total: -1.00 -72.59 246.24 1.40 -71.19 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.30 Total: 26.78 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 3.92 Total: 16.99 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -4.15 Total: -97.63 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: -0.10 Total: -61.05 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -72.59 1.40 -71.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306549975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.118 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds