Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00175 * 2 1 4 4 O 1.20831 * 119.99687 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00181 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47328 * 59.99716 * 5 3 2 7 7 C 1.52997 * 109.46910 * 299.99410 * 5 3 2 8 8 C 1.53006 * 109.47164 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47127 * 59.99836 * 8 7 5 10 10 C 1.53000 * 109.47060 * 300.00449 * 9 8 7 11 11 C 1.52996 * 109.47328 * 60.00126 * 10 9 8 12 12 H 1.09004 * 109.47108 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47235 * 59.99852 * 11 10 9 14 14 H 1.07999 * 120.00019 * 239.99967 * 13 11 10 15 15 C 1.37877 * 120.00129 * 60.00252 * 13 11 10 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 11 17 17 Si 1.86790 * 120.00259 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47328 * 59.99668 * 17 15 13 19 19 H 1.48494 * 109.47468 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47142 * 299.99980 * 17 15 13 21 21 H 1.09003 * 109.47035 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47220 * 60.00495 * 1 2 3 23 23 H 1.09007 * 109.47310 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47375 * 300.00278 * 7 5 3 25 25 H 1.09000 * 109.47140 * 60.00295 * 7 5 3 26 26 H 1.08998 * 109.46505 * 299.99708 * 8 7 5 27 27 H 1.08996 * 109.46884 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 9 8 7 29 29 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 30 30 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 31 31 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 32 32 H 0.96999 * 119.99977 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5812 1.2484 8 6 5.6417 0.6618 1.2482 9 6 6.0750 2.1291 1.2484 10 6 5.5274 2.8228 -0.0005 11 6 3.9996 2.7422 -0.0002 12 1 3.6095 3.2369 -0.8898 13 6 3.4608 3.4249 1.2305 14 1 2.8685 2.8679 1.9414 15 6 3.7239 4.7606 1.4490 16 7 4.4455 5.4387 0.5835 17 14 3.0555 5.6069 2.9741 18 1 3.5863 4.9336 4.1867 19 1 3.4766 7.0309 2.9748 20 1 1.5725 5.5288 2.9738 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.7244 1.0751 2.1386 25 1 3.8047 -0.4641 1.2483 26 1 6.0314 0.1680 0.3580 27 1 6.0317 0.1672 2.1377 28 1 7.1635 2.1865 1.2478 29 1 5.6853 2.6228 2.1386 30 1 5.8365 3.8681 -0.0005 31 1 5.9172 2.3291 -0.8907 32 1 4.6309 6.3783 0.7374 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032226253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -123.926547 kcal Electronic energy + Delta-G solvation = -15057.563130 eV Core-core repulsion = 12595.750501 eV Total energy + Delta-G solvation = -2461.812630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52159 -39.07198 -37.15411 -34.50453 -32.11983 -31.07817 -28.55719 -26.95033 -24.30618 -23.00420 -21.57271 -20.45291 -18.32418 -17.81831 -17.38889 -17.07713 -16.50499 -15.64047 -14.86892 -14.80990 -14.62959 -13.99715 -13.59068 -13.39849 -13.15808 -12.84784 -12.72172 -12.64920 -12.49046 -11.99831 -11.82661 -11.63852 -11.45490 -11.31300 -10.86310 -10.73296 -10.51974 -10.22206 -7.99599 -6.03790 1.37372 1.39996 1.45963 1.46408 1.98827 2.47325 3.29966 3.97720 4.12570 4.13278 4.35718 4.39152 4.52600 4.60326 4.73108 4.75547 4.80645 4.96390 5.00925 5.10477 5.27965 5.39108 5.46440 5.53592 5.67455 5.74831 5.81353 5.98589 6.21914 6.44593 6.96529 7.05714 7.56918 9.06029 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.014111 C = 0.010635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.118597 B = 1983.814743 C = 2632.091201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.459 3.541 4 O -0.523 6.523 5 C -0.068 4.068 6 H 0.107 0.893 7 C -0.093 4.093 8 C -0.102 4.102 9 C -0.103 4.103 10 C -0.105 4.105 11 C 0.058 3.942 12 H -0.014 1.014 13 C -0.474 4.474 14 H 0.039 0.961 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.288 1.288 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.138 0.862 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -12.349 0.318 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.410 6.410 5 C -0.087 4.087 6 H 0.125 0.875 7 C -0.131 4.131 8 C -0.139 4.139 9 C -0.141 4.141 10 C -0.143 4.143 11 C 0.040 3.960 12 H 0.005 0.995 13 C -0.513 4.513 14 H 0.057 0.943 15 C -0.186 4.186 16 N -0.563 5.563 17 Si 0.762 3.238 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.214 1.214 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.156 0.844 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.934 -11.872 0.303 11.913 hybrid contribution -0.904 1.303 0.592 1.693 sum -1.838 -10.569 0.895 10.765 Atomic orbital electron populations 1.23445 0.75978 1.05382 1.01744 1.86501 1.24179 1.33225 1.84488 1.24392 0.93016 0.80841 0.71494 1.90675 1.67637 1.37578 1.45087 1.21263 0.85165 1.00412 1.01868 0.87530 1.21380 0.97076 0.99362 0.95274 1.21439 0.93872 0.95974 1.02609 1.21344 0.98458 0.95900 0.98377 1.21404 0.95946 1.00930 0.96015 1.18544 0.93575 0.88539 0.95376 0.99537 1.21048 1.29483 0.94640 1.06107 0.94260 1.25476 0.96152 0.98213 0.98784 1.69979 1.40680 1.08678 1.36922 0.85975 0.78279 0.77913 0.81659 1.19187 1.21054 1.21390 0.93173 0.92689 0.84440 0.93276 0.89847 0.90702 0.90421 0.92650 0.93980 0.92180 0.94379 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.37 -12.41 10.47 -51.41 -0.54 -12.95 16 3 C 0.46 19.39 6.79 71.23 0.48 19.87 16 4 O -0.52 -26.70 14.44 21.95 0.32 -26.39 16 5 C -0.07 -2.73 2.40 -11.54 -0.03 -2.76 16 6 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 7 C -0.09 -3.21 4.91 30.60 0.15 -3.06 16 8 C -0.10 -3.12 5.92 30.60 0.18 -2.94 16 9 C -0.10 -4.01 5.70 30.59 0.17 -3.83 16 10 C -0.10 -4.79 5.23 30.59 0.16 -4.63 16 11 C 0.06 2.92 1.77 -11.54 -0.02 2.90 16 12 H -0.01 -0.79 8.10 -2.38 -0.02 -0.81 16 13 C -0.47 -26.41 5.03 25.60 0.13 -26.29 16 14 H 0.04 2.23 6.26 -2.91 -0.02 2.21 16 15 C 0.01 0.60 5.30 84.65 0.45 1.05 16 16 N -0.92 -54.79 11.32 21.45 0.24 -54.54 16 17 Si 0.93 46.12 29.54 68.60 2.03 48.15 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 20 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 21 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 22 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 23 H 0.14 2.32 8.14 -2.38 -0.02 2.31 16 24 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 25 H 0.08 2.36 8.11 -2.39 -0.02 2.34 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.87 7.22 -2.39 -0.02 1.85 16 30 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -67.41 256.50 6.01 -61.40 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.09 Total: 2.09 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 2.88 Total: -17.76 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.24 Total: -54.54 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.22 Total: -39.33 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -67.41 6.01 -61.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032226253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.529 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds