Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99910 * 2 1 4 4 O 1.20819 * 119.99772 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99850 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46980 * 299.99889 * 5 3 2 7 7 C 1.53000 * 109.46912 * 59.99761 * 5 3 2 8 8 C 1.52997 * 109.47060 * 179.97438 * 7 5 3 9 9 C 1.53006 * 109.47127 * 300.00449 * 8 7 5 10 10 C 1.52997 * 109.47164 * 59.99836 * 9 8 7 11 11 C 1.52996 * 109.46946 * 179.97438 * 5 3 2 12 12 H 1.08992 * 109.47554 * 299.99877 * 11 5 3 13 13 C 1.50701 * 109.46990 * 60.00259 * 11 5 3 14 14 H 1.07998 * 120.00099 * 0.02562 * 13 11 5 15 15 C 1.37880 * 119.99755 * 179.97438 * 13 11 5 16 16 N 1.31515 * 120.00246 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47008 * 60.00170 * 17 15 13 19 19 H 1.48496 * 109.46873 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47134 * 299.99873 * 17 15 13 21 21 H 1.09007 * 109.46630 * 60.00270 * 1 2 3 22 22 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47298 * 300.00737 * 1 2 3 24 24 H 1.09002 * 109.47398 * 300.00078 * 7 5 3 25 25 H 1.09001 * 109.47194 * 60.00258 * 7 5 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 8 7 5 27 27 H 1.08996 * 109.47853 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 29 29 H 1.09000 * 109.47050 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47045 * 180.02562 * 10 9 8 31 31 H 1.09001 * 109.47375 * 59.99966 * 10 9 8 32 32 H 0.96991 * 120.00061 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6417 0.6616 -1.2481 9 6 6.0750 2.1290 -1.2485 10 6 5.5275 2.8228 0.0004 11 6 4.0001 2.7421 -0.0002 12 1 3.6108 3.2356 -0.8906 13 6 3.4608 3.4260 1.2297 14 1 2.8683 2.8697 1.9409 15 6 3.7247 4.7617 1.4473 16 7 4.4475 5.4387 0.5820 17 14 3.0556 5.6096 2.9715 18 1 3.5851 4.9369 4.1849 19 1 3.4767 7.0336 2.9707 20 1 1.5726 5.5325 2.9700 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.8048 -0.4643 -1.2482 25 1 3.7245 1.0749 -2.1386 26 1 6.0315 0.1680 -0.3578 27 1 6.0319 0.1677 -2.1379 28 1 5.6853 2.6227 -2.1387 29 1 7.1635 2.1864 -1.2478 30 1 5.8358 3.8683 -0.0001 31 1 5.9172 2.3292 0.8907 32 1 4.6328 6.3784 0.7350 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032226255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -109.604791 kcal Electronic energy + Delta-G solvation = -14881.522251 eV Core-core repulsion = 12420.330659 eV Total energy + Delta-G solvation = -2461.191592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86042 -37.37202 -35.52500 -32.77997 -30.59826 -29.41959 -27.25176 -24.85748 -22.75074 -21.19184 -19.98771 -18.68323 -16.65547 -16.43630 -15.91519 -15.44168 -14.51774 -13.78365 -13.47160 -13.25893 -12.91459 -12.52561 -12.12064 -11.92303 -11.48990 -11.38424 -10.87434 -10.67425 -10.54566 -10.39058 -10.20153 -10.15632 -9.78004 -9.60951 -9.39248 -8.97287 -8.64038 -8.19621 -5.87396 -3.89377 3.14010 3.39768 3.43293 3.44582 3.48026 4.54408 5.34920 5.44041 5.46284 5.49544 5.52209 5.54235 5.74216 6.02687 6.04607 6.18347 6.27120 6.36711 6.45467 6.59297 6.65486 6.81479 6.93540 7.13049 7.22806 7.43262 7.81487 8.01586 8.17124 8.48920 8.68786 9.06706 9.71562 11.19203 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.014104 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.553518 B = 1984.720216 C = 2987.718049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.375 6.375 3 C 0.456 3.544 4 O -0.473 6.473 5 C -0.067 4.067 6 H 0.092 0.908 7 C -0.108 4.108 8 C -0.112 4.112 9 C -0.123 4.123 10 C -0.110 4.110 11 C 0.066 3.934 12 H 0.034 0.966 13 C -0.491 4.491 14 H 0.049 0.951 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.279 1.279 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.036 0.964 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -9.957 -2.682 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.294 6.294 3 C 0.297 3.703 4 O -0.356 6.356 5 C -0.086 4.086 6 H 0.110 0.890 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.161 4.161 10 C -0.148 4.148 11 C 0.047 3.953 12 H 0.052 0.948 13 C -0.529 4.529 14 H 0.067 0.933 15 C -0.139 4.139 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.074 0.926 22 H 0.108 0.892 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.186 -9.443 -2.710 9.895 hybrid contribution -0.704 0.576 0.888 1.272 sum -1.890 -8.866 -1.821 9.247 Atomic orbital electron populations 1.23060 0.78335 1.02387 1.02072 1.86541 1.21987 1.35485 1.85377 1.24226 0.92611 0.80620 0.72811 1.90688 1.66577 1.35811 1.42554 1.21379 0.85149 1.02885 0.99232 0.88959 1.21508 0.96299 0.99473 0.97304 1.21500 0.94866 0.97919 1.00675 1.21680 0.98922 0.94690 1.00780 1.21632 0.97283 1.02458 0.93445 1.18603 0.92260 0.85963 0.98445 0.94772 1.20962 1.30994 0.94879 1.06065 0.93304 1.24843 0.95297 0.97290 0.96449 1.69842 1.39256 1.08809 1.35588 0.86711 0.79529 0.78422 0.83645 1.20486 1.21413 1.20447 0.92592 0.89156 0.92458 0.92183 0.92204 0.92337 0.93020 0.92835 0.93646 0.88439 0.94515 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.38 -6.81 10.47 -39.27 -0.41 -7.22 16 3 C 0.46 9.85 6.79 36.01 0.24 10.10 16 4 O -0.47 -11.96 14.44 -18.74 -0.27 -12.24 16 5 C -0.07 -1.40 2.13 -91.77 -0.20 -1.60 16 6 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 7 C -0.11 -1.86 5.13 -26.73 -0.14 -2.00 16 8 C -0.11 -1.80 5.92 -26.73 -0.16 -1.96 16 9 C -0.12 -2.29 5.92 -26.73 -0.16 -2.45 16 10 C -0.11 -2.53 4.98 -26.76 -0.13 -2.66 16 11 C 0.07 1.64 1.28 -91.80 -0.12 1.52 16 12 H 0.03 0.96 8.10 -51.93 -0.42 0.54 16 13 C -0.49 -13.81 6.98 -34.44 -0.24 -14.05 16 14 H 0.05 1.40 7.29 -52.49 -0.38 1.01 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -26.05 11.31 55.43 0.63 -25.42 16 17 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H 0.06 0.79 8.13 -51.92 -0.42 0.37 16 22 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 24 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -30.79 261.36 -5.96 -36.75 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.90 Total: -3.23 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.63 Total: -25.42 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.68 Total: -19.45 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.79 -5.96 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032226255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.857 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds