Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 116.99903 * 2 1 4 4 O 1.20826 * 120.00367 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00092 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47318 * 59.99266 * 5 3 2 7 7 C 1.53002 * 109.46925 * 300.00032 * 5 3 2 8 8 C 1.52996 * 109.47340 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.47217 * 59.99402 * 8 7 5 10 10 C 1.52993 * 109.47066 * 300.00453 * 9 8 7 11 11 C 1.52996 * 109.47476 * 60.00101 * 10 9 8 12 12 H 1.09004 * 109.47108 * 59.99715 * 11 10 9 13 13 C 1.50699 * 109.47235 * 179.97438 * 11 10 9 14 14 H 1.07999 * 120.00019 * 120.00033 * 13 11 10 15 15 C 1.37877 * 120.00129 * 299.99748 * 13 11 10 16 16 N 1.31513 * 119.99969 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 119.99840 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47285 * 89.99751 * 17 15 13 19 19 H 1.48500 * 109.47311 * 209.99625 * 17 15 13 20 20 H 1.48498 * 109.47098 * 329.99825 * 17 15 13 21 21 H 1.09006 * 109.47532 * 60.00248 * 1 2 3 22 22 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47220 * 299.99917 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.99901 * 7 5 3 25 25 H 1.09004 * 109.47059 * 59.99503 * 7 5 3 26 26 H 1.09001 * 109.47364 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46785 * 299.99692 * 8 7 5 28 28 H 1.08996 * 109.46698 * 60.00426 * 9 8 7 29 29 H 1.09002 * 109.46838 * 179.97438 * 9 8 7 30 30 H 1.09000 * 109.46925 * 179.97438 * 10 9 8 31 31 H 1.08996 * 109.47340 * 299.99580 * 10 9 8 32 32 H 0.96999 * 119.99716 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8907 7 6 4.1138 0.5810 1.2483 8 6 5.6417 0.6616 1.2482 9 6 6.0750 2.1290 1.2485 10 6 5.5274 2.8227 -0.0004 11 6 3.9996 2.7422 -0.0002 12 1 3.6099 3.2359 0.8901 13 6 3.4603 3.4260 -1.2300 14 1 2.8678 2.8697 -1.9412 15 6 3.7233 4.7619 -1.4473 16 7 3.2531 5.3586 -2.5208 17 14 4.7488 5.7240 -0.2175 18 1 6.1830 5.6360 -0.5926 19 1 4.3222 7.1464 -0.2226 20 1 4.5564 5.1544 1.1403 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.7244 1.0750 2.1386 25 1 3.8047 -0.4643 1.2483 26 1 6.0318 0.1669 2.1377 27 1 6.0314 0.1679 0.3579 28 1 5.6852 2.6227 2.1387 29 1 7.1635 2.1864 1.2488 30 1 5.8358 3.8682 0.0001 31 1 5.9172 2.3291 -0.8906 32 1 3.4385 6.2983 -2.6738 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032226257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = -101.073407 kcal Electronic energy + Delta-G solvation = -14946.218815 eV Core-core repulsion = 12485.397172 eV Total energy + Delta-G solvation = -2460.821643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.95292 -37.65493 -35.58694 -32.71658 -30.83985 -30.21658 -27.30197 -24.88672 -22.91168 -21.33234 -20.14628 -18.88907 -16.79958 -16.65230 -16.08437 -15.63102 -14.73365 -13.75899 -13.54261 -13.45923 -13.17600 -12.78596 -12.50098 -12.08945 -11.72794 -11.48538 -11.14638 -10.95593 -10.70966 -10.41887 -10.23619 -10.05789 -9.98159 -9.73348 -9.47207 -9.02686 -8.81846 -8.41104 -5.94869 -3.90630 3.09589 3.32091 3.38406 3.44258 3.46205 4.50416 5.18804 5.25395 5.29816 5.39259 5.45473 5.52961 5.68195 5.79713 5.88338 5.97557 6.03444 6.12791 6.16384 6.28469 6.35595 6.55321 6.61880 6.81220 6.88687 6.96424 7.19131 7.51856 7.83229 8.58545 8.64257 9.06939 9.66531 11.19325 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.014334 C = 0.010059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.291754 B = 1952.993758 C = 2782.925084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.456 3.544 4 O -0.469 6.469 5 C -0.057 4.057 6 H 0.099 0.901 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.126 4.126 10 C -0.120 4.120 11 C 0.029 3.971 12 H 0.034 0.966 13 C -0.492 4.492 14 H 0.070 0.930 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.885 3.115 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.266 1.266 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -10.633 7.494 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.293 6.293 3 C 0.297 3.703 4 O -0.351 6.351 5 C -0.076 4.076 6 H 0.117 0.883 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.164 4.164 10 C -0.158 4.158 11 C 0.010 3.990 12 H 0.052 0.948 13 C -0.530 4.530 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.544 5.544 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.227 1.227 20 H -0.191 1.191 21 H 0.078 0.922 22 H 0.109 0.891 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.472 -10.136 7.396 12.634 hybrid contribution 0.250 0.772 0.469 0.938 sum 1.722 -9.364 7.865 12.349 Atomic orbital electron populations 1.23078 0.78051 1.02462 1.02216 1.86509 1.22187 1.35204 1.85384 1.23993 0.92386 0.80794 0.73160 1.90721 1.66496 1.35737 1.42165 1.21082 0.85834 1.01032 0.99622 0.88301 1.21557 0.96084 1.00034 0.97261 1.21465 0.95064 0.96989 1.01314 1.21664 0.99449 0.95605 0.99659 1.21977 0.98331 0.99169 0.96309 1.19092 0.91297 0.89363 0.99285 0.94763 1.20857 1.31815 0.95145 1.05138 0.91193 1.24932 0.95815 0.97461 0.95018 1.69894 1.46229 1.11349 1.26887 0.86885 0.80009 0.78623 0.82884 1.20739 1.22682 1.19122 0.92240 0.89082 0.92589 0.92061 0.91574 0.92467 0.91836 0.92588 0.92906 0.93092 0.91841 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.66 10.47 -39.23 -0.41 -7.07 16 3 C 0.46 9.66 6.79 36.01 0.24 9.91 16 4 O -0.47 -11.81 14.43 -18.75 -0.27 -12.08 16 5 C -0.06 -1.12 2.13 -91.77 -0.20 -1.32 16 6 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 7 C -0.11 -1.76 5.14 -26.73 -0.14 -1.90 16 8 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 9 C -0.13 -2.09 5.92 -26.73 -0.16 -2.25 16 10 C -0.12 -2.52 4.68 -26.74 -0.13 -2.65 16 11 C 0.03 0.67 0.87 -91.78 -0.08 0.59 16 12 H 0.03 0.87 7.16 -51.93 -0.37 0.50 16 13 C -0.49 -14.12 7.56 -34.44 -0.26 -14.38 16 14 H 0.07 2.21 7.54 -52.49 -0.40 1.82 16 15 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 16 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 17 Si 0.89 22.63 24.37 -169.99 -4.14 18.49 16 18 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 19 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 20 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 21 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 254.55 15.07 3.84 3.84 Total: -1.00 -32.99 254.55 -4.88 -37.87 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.77 Total: -2.92 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 0.10 Total: -10.22 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.77 Total: -27.90 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.68 Total: -19.15 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.14 Total: 18.49 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.99 -4.88 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032226257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.204 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds