Wall clock time and date at job start Mon Mar 30 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47154 * 269.99814 * 3 2 1 5 5 H 1.48499 * 109.46813 * 30.00151 * 3 2 1 6 6 H 1.48501 * 109.46926 * 149.99694 * 3 2 1 7 7 C 1.37876 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99704 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99975 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00163 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46114 * 39.99763 * 13 11 10 15 15 C 1.53044 * 109.46306 * 280.01769 * 13 11 10 16 16 C 1.53098 * 109.28949 * 180.80366 * 15 13 11 17 17 C 1.53119 * 109.15392 * 57.66392 * 16 15 13 18 18 C 1.53043 * 109.27960 * 302.34568 * 17 16 15 19 19 N 1.46847 * 109.46132 * 159.97715 * 13 11 10 20 20 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46973 * 59.99814 * 9 7 2 22 22 H 1.08999 * 109.46871 * 299.99726 * 9 7 2 23 23 H 0.96998 * 120.00228 * 359.97438 * 10 9 7 24 24 H 1.09001 * 109.49858 * 300.75833 * 15 13 11 25 25 H 1.09000 * 109.49965 * 60.87383 * 15 13 11 26 26 H 1.09005 * 109.52646 * 297.75935 * 16 15 13 27 27 H 1.08997 * 109.57489 * 177.59794 * 16 15 13 28 28 H 1.09000 * 109.50319 * 182.40440 * 17 16 15 29 29 H 1.08998 * 109.50623 * 62.28215 * 17 16 15 30 30 H 1.09004 * 109.45911 * 299.16296 * 18 17 16 31 31 H 1.08995 * 109.46353 * 179.19681 * 18 17 16 32 32 H 1.00899 * 111.00206 * 57.65282 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1292 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5751 -0.0013 11 6 5.3250 -2.8214 -0.0005 12 8 6.1131 -1.8996 0.0008 13 6 5.8274 -4.2422 -0.0014 14 1 5.2066 -4.8465 -0.6629 15 6 5.7597 -4.8078 1.4191 16 6 6.2896 -6.2442 1.4173 17 6 7.7215 -6.2507 0.8750 18 6 7.7326 -5.6434 -0.5297 19 7 7.2173 -4.2694 -0.4744 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6807 0.8905 22 1 3.8752 -0.6796 -0.8895 23 1 3.3696 -3.3124 -0.0020 24 1 6.3692 -4.1957 2.0839 25 1 4.7257 -4.8020 1.7642 26 1 5.6569 -6.8651 0.7830 27 1 6.2833 -6.6370 2.4340 28 1 8.0893 -7.2758 0.8311 29 1 8.3619 -5.6614 1.5312 30 1 7.1029 -6.2412 -1.1888 31 1 8.7528 -5.6335 -0.9131 32 1 7.8063 -3.6852 0.0999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:36 Heat of formation + Delta-G solvation = -78.289520 kcal Electronic energy + Delta-G solvation = -14148.615452 eV Core-core repulsion = 11721.074543 eV Total energy + Delta-G solvation = -2427.540909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.08952 -38.84882 -36.16653 -34.44004 -32.71063 -32.27513 -29.83617 -25.70710 -24.18695 -23.63241 -21.53960 -21.26057 -19.27777 -18.00663 -17.19348 -16.43165 -16.30974 -15.64826 -15.48407 -15.42102 -14.97602 -14.53086 -14.39104 -13.92814 -13.56088 -13.09735 -13.02128 -12.70787 -12.52768 -12.21016 -11.94347 -11.79356 -11.66511 -11.50010 -10.92774 -10.70834 -9.95094 -9.29771 -8.40897 -6.47932 1.32077 1.34153 1.46693 1.69080 2.27106 2.34749 2.94422 3.36622 3.72960 3.85871 3.93228 4.15960 4.24288 4.28540 4.51375 4.74015 4.78343 4.86132 4.94689 5.01417 5.08503 5.10666 5.17433 5.24707 5.37217 5.50375 5.97531 6.10421 6.36388 6.52891 6.83331 7.14752 7.39125 8.73824 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061890 B = 0.006520 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.303943 B = 4293.566005 C = 4549.674711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.232 3.768 10 N -0.704 5.704 11 C 0.505 3.495 12 O -0.590 6.590 13 C 0.084 3.916 14 H 0.117 0.883 15 C -0.144 4.144 16 C -0.112 4.112 17 C -0.155 4.155 18 C 0.058 3.942 19 N -0.685 5.685 20 H 0.273 0.727 21 H 0.012 0.988 22 H 0.009 0.991 23 H 0.408 0.592 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.322 -13.544 1.987 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.108 3.892 10 N -0.354 5.354 11 C 0.292 3.708 12 O -0.471 6.471 13 C -0.030 4.030 14 H 0.134 0.866 15 C -0.184 4.184 16 C -0.150 4.150 17 C -0.194 4.194 18 C -0.071 4.071 19 N -0.316 5.316 20 H 0.082 0.918 21 H 0.030 0.970 22 H 0.027 0.973 23 H 0.244 0.756 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.524 -12.747 1.302 18.631 hybrid contribution -0.327 0.616 0.943 1.173 sum 13.197 -12.131 2.245 18.066 Atomic orbital electron populations 1.69977 1.07645 1.28632 1.50667 1.25586 0.95532 1.02617 0.93548 0.85868 0.79210 0.79410 0.79462 1.19019 1.19657 1.18630 1.21287 0.89868 0.94648 1.52673 0.92157 1.19088 0.93428 0.81109 0.95543 1.46015 1.06702 1.09665 1.72974 1.21276 0.82079 0.92313 0.75180 1.90603 1.56328 1.48027 1.52139 1.21434 0.92778 0.91034 0.97720 0.86567 1.22156 1.02907 0.98313 0.94997 1.21548 0.96651 0.94277 1.02504 1.22260 0.96799 1.02801 0.97586 1.22168 1.01315 0.87168 0.96443 1.60392 1.01376 1.12094 1.57742 0.91808 0.97011 0.97277 0.75629 0.92638 0.90492 0.90428 0.90488 0.89246 0.92372 0.90095 0.89312 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 2 C 0.03 1.57 5.47 84.65 0.46 2.04 16 3 Si 0.94 44.58 27.47 68.60 1.88 46.46 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 7 C -0.55 -30.52 9.83 25.60 0.25 -30.27 16 8 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 9 C 0.23 11.64 4.50 85.64 0.38 12.02 16 10 N -0.70 -28.78 5.55 -466.80 -2.59 -31.37 16 11 C 0.50 19.41 7.08 87.66 0.62 20.03 16 12 O -0.59 -27.46 16.19 -3.04 -0.05 -27.51 16 13 C 0.08 2.27 2.83 44.19 0.12 2.40 16 14 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 15 C -0.14 -3.23 5.34 30.64 0.16 -3.07 16 16 C -0.11 -1.80 6.00 30.67 0.18 -1.61 16 17 C -0.16 -2.28 6.08 30.65 0.19 -2.09 16 18 C 0.06 1.01 6.55 86.33 0.57 1.58 16 19 N -0.69 -17.79 6.28 -495.54 -3.11 -20.90 16 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 21 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 22 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 23 H 0.41 14.54 8.32 -92.71 -0.77 13.77 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.35 9.62 8.31 -89.69 -0.75 8.88 16 Total: -1.00 -67.54 264.70 -1.08 -68.62 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.46 Total: 19.19 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 2.94 Total: 1.02 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -5.40 Total: -107.79 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -67.54 -1.08 -68.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.668 kcal (2) G-P(sol) polarization free energy of solvation -67.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds