Wall clock time and date at job start Mon Mar 30 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99669 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00182 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99786 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.46374 * 320.01840 * 13 11 10 15 15 C 1.53035 * 109.46611 * 79.99573 * 13 11 10 16 16 C 1.53123 * 109.28171 * 179.19333 * 15 13 11 17 17 C 1.53115 * 109.16075 * 302.35141 * 16 15 13 18 18 C 1.53038 * 109.28039 * 57.64779 * 17 16 15 19 19 N 1.46847 * 109.52704 * 300.82148 * 18 17 16 20 20 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 22 22 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 23 23 H 0.97003 * 120.00111 * 0.02562 * 10 9 7 24 24 H 1.08998 * 109.50756 * 299.14092 * 15 13 11 25 25 H 1.09005 * 109.50109 * 59.21689 * 15 13 11 26 26 H 1.09004 * 109.52000 * 62.25015 * 16 15 13 27 27 H 1.08988 * 109.52390 * 182.37654 * 16 15 13 28 28 H 1.08995 * 109.50521 * 177.58928 * 17 16 15 29 29 H 1.09001 * 109.50268 * 297.67284 * 17 16 15 30 30 H 1.09009 * 109.46093 * 60.84063 * 18 17 16 31 31 H 1.09002 * 109.46299 * 180.81210 * 18 17 16 32 32 H 1.00893 * 111.00123 * 297.64616 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7332 -6.0288 -0.0005 14 1 3.5683 -5.7930 -0.6602 15 6 3.2541 -6.2537 1.4208 16 6 4.2332 -7.4310 1.4201 17 6 3.5242 -8.6739 0.8753 18 6 2.9955 -8.3788 -0.5302 19 7 2.0629 -7.2458 -0.4759 20 1 -0.4849 -0.8401 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6241 -2.5567 -0.8903 23 1 3.1569 -3.4354 -0.0002 24 1 3.7651 -5.3555 1.7676 25 1 2.4179 -6.4755 2.0840 26 1 5.0885 -7.1930 0.7877 27 1 4.5744 -7.6216 2.4375 28 1 4.2282 -9.5049 0.8322 29 1 2.6927 -8.9349 1.5301 30 1 3.8294 -8.1318 -1.1874 31 1 2.4775 -9.2572 -0.9152 32 1 1.2614 -7.4642 0.0966 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667442.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:37 Heat of formation + Delta-G solvation = -86.490782 kcal Electronic energy + Delta-G solvation = -14135.562408 eV Core-core repulsion = 11707.665866 eV Total energy + Delta-G solvation = -2427.896542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.16058 -38.91064 -36.43857 -34.51182 -32.75726 -32.21295 -28.90926 -25.77086 -24.32730 -24.12906 -21.54796 -21.29250 -19.51432 -18.09519 -17.18220 -16.37704 -15.91047 -15.62262 -15.54107 -15.51274 -15.02959 -14.55871 -14.32764 -13.98503 -13.60905 -13.12585 -13.06749 -12.58852 -12.55923 -12.25946 -11.89296 -11.82697 -11.54372 -11.01907 -10.77621 -10.73658 -10.00223 -9.34982 -8.81199 -6.56818 1.55529 1.61141 1.65623 1.82470 2.26084 2.56629 3.07161 3.30782 3.66523 3.80709 3.87640 4.11506 4.19472 4.23048 4.46451 4.70453 4.76482 4.81307 4.89697 4.93581 5.04514 5.06881 5.13775 5.33398 5.41063 5.52142 5.95222 6.06814 6.29316 6.30351 6.76757 7.21445 7.38125 8.58101 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.062343 B = 0.006116 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.023411 B = 4576.858805 C = 4841.599032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.033 4.033 3 Si 1.134 2.866 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.253 3.747 10 N -0.702 5.702 11 C 0.500 3.500 12 O -0.595 6.595 13 C 0.086 3.914 14 H 0.119 0.881 15 C -0.143 4.143 16 C -0.111 4.111 17 C -0.156 4.156 18 C 0.058 3.942 19 N -0.688 5.688 20 H 0.253 0.747 21 H -0.017 1.017 22 H -0.019 1.019 23 H 0.409 0.591 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -14.567 2.019 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.231 4.231 3 Si 0.953 3.047 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.667 4.667 8 H 0.095 0.905 9 C 0.130 3.870 10 N -0.352 5.352 11 C 0.287 3.713 12 O -0.476 6.476 13 C -0.027 4.027 14 H 0.137 0.863 15 C -0.183 4.183 16 C -0.148 4.148 17 C -0.195 4.195 18 C -0.071 4.071 19 N -0.318 5.318 20 H 0.062 0.938 21 H 0.001 0.999 22 H -0.001 1.001 23 H 0.245 0.755 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.020 -12.942 1.329 17.713 hybrid contribution -0.171 -1.698 0.962 1.959 sum 11.849 -14.640 2.291 18.973 Atomic orbital electron populations 1.70880 1.08319 1.29901 1.47489 1.27687 0.96331 1.07233 0.91878 0.82749 0.74155 0.69870 0.77974 1.19524 1.21081 1.18405 1.22453 0.95596 0.91659 1.56983 0.90497 1.18677 0.89409 0.85682 0.93280 1.46032 1.11003 1.05194 1.72928 1.21449 0.89809 0.84892 0.75113 1.90605 1.19388 1.85452 1.52194 1.21426 0.94744 0.88669 0.97856 0.86344 1.22160 1.00162 1.01220 0.94777 1.21549 0.97466 0.93181 1.02629 1.22261 1.01115 0.98636 0.97467 1.22184 0.95911 0.92447 0.96558 1.60391 1.10213 1.03403 1.57825 0.93761 0.99935 1.00070 0.75532 0.90393 0.92978 0.90158 0.90329 0.89003 0.92513 0.89897 0.89319 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.65 21.45 0.29 -58.08 16 2 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 3 Si 1.13 48.23 29.90 68.60 2.05 50.28 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.63 -35.00 9.28 25.60 0.24 -34.76 16 8 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 9 C 0.25 14.10 4.74 85.63 0.41 14.51 16 10 N -0.70 -30.57 5.55 -466.79 -2.59 -33.16 16 11 C 0.50 20.76 7.08 87.66 0.62 21.38 16 12 O -0.60 -30.33 16.19 -3.01 -0.05 -30.38 16 13 C 0.09 2.47 2.82 44.19 0.12 2.60 16 14 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 15 C -0.14 -3.36 5.34 30.65 0.16 -3.20 16 16 C -0.11 -1.80 6.00 30.67 0.18 -1.61 16 17 C -0.16 -2.37 6.08 30.65 0.19 -2.18 16 18 C 0.06 1.06 6.55 86.33 0.57 1.62 16 19 N -0.69 -19.00 6.28 -495.54 -3.11 -22.11 16 20 H 0.25 16.55 7.22 -92.71 -0.67 15.88 16 21 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 22 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 23 H 0.41 14.85 8.32 -92.71 -0.77 14.08 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.34 10.33 8.31 -89.70 -0.75 9.59 16 Total: -1.00 -72.34 266.99 -0.76 -73.10 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.30 Total: 23.41 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 2.95 Total: -3.05 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -5.41 Total: -113.36 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -72.34 -0.76 -73.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667442.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.394 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds