Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99886 * 2 1 4 4 H 1.48508 * 109.46777 * 269.99797 * 3 2 1 5 5 H 1.48497 * 109.47144 * 29.99876 * 3 2 1 6 6 H 1.48497 * 109.47161 * 150.00124 * 3 2 1 7 7 C 1.37880 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99590 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.47009 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00252 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99735 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00004 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.53553 * 299.89680 * 13 11 10 15 15 C 1.53120 * 109.50095 * 179.79845 * 13 11 10 16 16 C 1.53123 * 109.15816 * 182.40603 * 15 13 11 17 17 C 1.53034 * 109.27909 * 57.65334 * 16 15 13 18 18 N 1.46847 * 109.52616 * 300.82043 * 17 16 15 19 19 C 1.46848 * 111.19556 * 61.74332 * 18 17 16 20 20 H 0.97001 * 120.00179 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47526 * 59.99849 * 9 7 2 22 22 H 1.08997 * 109.47566 * 299.99650 * 9 7 2 23 23 H 0.97002 * 119.99549 * 359.97438 * 10 9 7 24 24 H 1.08996 * 109.52597 * 302.30720 * 15 13 11 25 25 H 1.09000 * 109.52319 * 62.50322 * 15 13 11 26 26 H 1.08998 * 109.50042 * 177.59599 * 16 15 13 27 27 H 1.09004 * 109.50141 * 297.67612 * 16 15 13 28 28 H 1.09000 * 109.46034 * 180.80612 * 17 16 15 29 29 H 1.09004 * 109.46172 * 60.83746 * 17 16 15 30 30 H 1.00901 * 110.99839 * 297.64822 * 18 17 16 31 31 H 1.08995 * 109.46326 * 58.27554 * 19 18 17 32 32 H 1.08993 * 109.45984 * 178.25629 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7332 -6.0288 -0.0006 14 1 3.3592 -5.9727 -0.8911 15 6 1.9683 -7.3552 0.0040 16 6 2.9694 -8.5123 0.0641 17 6 3.8430 -8.3604 1.3114 18 7 4.5540 -7.0766 1.2592 19 6 3.6136 -5.9489 1.2487 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.1568 -3.4354 0.0002 24 1 1.3131 -7.3950 0.8741 25 1 1.3730 -7.4355 -0.9055 26 1 2.4298 -9.4582 0.1107 27 1 3.5987 -8.4957 -0.8258 28 1 4.5663 -9.1749 1.3495 29 1 3.2141 -8.3914 2.2012 30 1 5.1734 -7.0384 0.4636 31 1 2.9859 -5.9911 2.1387 32 1 4.1704 -5.0119 1.2411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036984751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -59.727380 kcal Electronic energy + Delta-G solvation = -14121.819339 eV Core-core repulsion = 11695.083346 eV Total energy + Delta-G solvation = -2426.735994 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.71022 -37.57736 -34.22853 -32.42203 -31.73831 -31.02683 -27.23562 -24.07807 -23.45737 -22.29127 -20.58045 -19.44914 -17.19856 -16.04817 -15.54542 -15.35678 -15.11425 -14.70023 -14.32001 -13.63009 -13.26468 -13.03397 -12.44668 -12.20492 -11.96376 -11.79924 -11.34927 -11.24877 -11.00191 -10.88556 -10.80497 -10.57321 -10.31960 -9.40502 -9.13237 -8.74091 -8.38951 -7.88426 -6.17091 -4.24175 3.24031 3.30205 3.32743 3.34720 4.00671 4.25400 4.38351 4.74355 4.83477 5.03465 5.07087 5.19125 5.28393 5.42971 5.51479 5.61302 5.76596 5.90901 5.91944 6.02193 6.22574 6.35468 6.86933 7.26217 7.30337 7.43130 7.50979 7.65936 7.96542 8.62107 8.77374 9.09522 9.42639 10.93151 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059664 B = 0.006238 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.180259 B = 4487.791458 C = 4841.570895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.711 5.711 11 C 0.503 3.497 12 O -0.557 6.557 13 C -0.145 4.145 14 H 0.089 0.911 15 C -0.098 4.098 16 C -0.157 4.157 17 C 0.054 3.946 18 N -0.682 5.682 19 C 0.067 3.933 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.027 0.973 23 H 0.390 0.610 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.340 0.660 31 H 0.079 0.921 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -13.171 0.542 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.287 3.713 12 O -0.436 6.436 13 C -0.169 4.169 14 H 0.107 0.893 15 C -0.136 4.136 16 C -0.197 4.197 17 C -0.076 4.076 18 N -0.310 5.310 19 C -0.063 4.063 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.223 0.777 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.097 0.903 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.099 -13.137 1.252 15.484 hybrid contribution 0.428 1.028 -1.061 1.538 sum 8.527 -12.109 0.191 14.811 Atomic orbital electron populations 1.69975 1.06135 1.27311 1.48910 1.24957 0.94909 0.99474 0.94674 0.86411 0.79644 0.82622 0.78218 1.20469 1.20987 1.19706 1.21226 0.93256 0.90459 1.53219 0.91895 1.19108 0.88354 0.82048 0.97692 1.46486 1.11049 1.06183 1.72174 1.20327 0.89245 0.84280 0.77413 1.90651 1.16966 1.84928 1.51023 1.22100 0.98295 0.95311 1.01180 0.89275 1.21341 0.97078 0.91644 1.03569 1.22302 0.98946 0.99149 0.99271 1.22062 0.96509 0.91558 0.97462 1.60707 1.20112 1.02201 1.47980 1.22025 0.93597 0.94457 0.96248 0.92442 0.95642 0.95533 0.77749 0.91050 0.91347 0.91283 0.92095 0.90830 0.90796 0.84283 0.90284 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.62 16 10 N -0.71 -14.98 5.45 -61.47 -0.33 -15.32 16 11 C 0.50 10.09 7.16 -10.99 -0.08 10.01 16 12 O -0.56 -13.57 15.98 5.55 0.09 -13.48 16 13 C -0.15 -2.08 2.67 -91.69 -0.25 -2.33 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.10 -1.33 4.58 -26.61 -0.12 -1.45 16 16 C -0.16 -1.58 6.08 -26.65 -0.16 -1.74 16 17 C 0.05 0.53 6.55 -3.84 -0.03 0.50 16 18 N -0.68 -7.34 6.87 -113.82 -0.78 -8.12 16 19 C 0.07 0.85 5.73 -3.83 -0.02 0.83 16 20 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.39 7.03 7.76 -40.82 -0.32 6.72 16 24 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.34 3.13 8.86 -39.29 -0.35 2.79 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.02 7.59 -51.93 -0.39 0.63 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -31.57 266.81 -7.21 -38.78 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.82 Total: 4.77 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.10 Total: -1.00 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.38 Total: -48.94 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.57 -7.21 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036984751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.952 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds