Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00473 * 3 2 1 5 5 H 1.48508 * 109.47255 * 30.00450 * 3 2 1 6 6 H 1.48503 * 109.47098 * 150.00337 * 3 2 1 7 7 C 1.37878 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 N 1.46894 * 110.02269 * 34.29795 * 13 11 10 15 15 C 1.54264 * 110.02958 * 272.90307 * 13 11 10 16 16 C 1.54967 * 104.16090 * 217.14025 * 15 13 11 17 17 C 1.54879 * 102.77779 * 37.88985 * 16 15 13 18 18 C 1.53877 * 110.03093 * 155.68963 * 13 11 10 19 19 H 0.97003 * 119.99632 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 21 21 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 22 22 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 23 23 H 1.00903 * 110.99924 * 300.70439 * 14 13 11 24 24 H 1.00896 * 111.00002 * 64.64761 * 14 13 11 25 25 H 1.09002 * 110.48886 * 335.78536 * 15 13 11 26 26 H 1.08997 * 110.48798 * 98.43055 * 15 13 11 27 27 H 1.08997 * 110.72113 * 279.57460 * 16 15 13 28 28 H 1.09005 * 110.76626 * 156.22683 * 16 15 13 29 29 H 1.08998 * 110.48755 * 203.40666 * 17 16 15 30 30 H 1.09003 * 110.49049 * 80.76117 * 17 16 15 31 31 H 1.08994 * 110.03019 * 238.56340 * 18 13 11 32 32 H 1.08997 * 110.03273 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0287 -0.0072 14 7 3.9297 -5.6714 0.7663 15 6 3.1263 -6.3799 -1.4570 16 6 3.2514 -7.9245 -1.4523 17 6 2.0931 -8.3591 -0.5205 18 6 2.0767 -7.2866 0.5883 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 3.1568 -3.4353 -0.0002 23 1 4.3785 -4.8539 0.3811 24 1 3.7034 -5.5345 1.7399 25 1 2.3480 -6.0625 -2.1509 26 1 4.0801 -5.9200 -1.7156 27 1 4.2132 -8.2323 -1.0423 28 1 3.1115 -8.3266 -2.4558 29 1 2.2933 -9.3431 -0.0965 30 1 1.1475 -8.3616 -1.0628 31 1 2.6466 -7.6324 1.4506 32 1 1.0500 -7.0685 0.8822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037479443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = -56.822940 kcal Electronic energy + Delta-G solvation = -14319.101590 eV Core-core repulsion = 11892.491542 eV Total energy + Delta-G solvation = -2426.610048 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87210 -36.92150 -34.37254 -32.93631 -31.92673 -28.65656 -27.49071 -26.54288 -23.07454 -20.97357 -20.66925 -18.94674 -17.48708 -16.08459 -15.68590 -15.32398 -14.93702 -14.55393 -14.27162 -13.89585 -13.10631 -12.98305 -12.07582 -11.91051 -11.68846 -11.17841 -11.05439 -11.01253 -10.95520 -10.94343 -10.75472 -10.46982 -10.34356 -9.91771 -9.45199 -8.78938 -8.30959 -7.96116 -6.21209 -4.28923 3.21068 3.25407 3.27266 3.29560 3.94975 4.31157 4.59485 4.67382 4.74709 5.10725 5.14882 5.48455 5.53672 5.61946 5.78292 5.78734 5.95969 6.01078 6.14668 6.18969 6.36288 6.46068 7.03673 7.26621 7.35788 7.41028 7.45241 7.60642 7.91501 8.53917 8.71817 9.00720 9.37956 10.88908 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.060181 B = 0.006699 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.147839 B = 4179.006962 C = 4371.041162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.712 5.712 11 C 0.470 3.530 12 O -0.552 6.552 13 C 0.099 3.901 14 N -0.828 5.828 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.108 4.108 19 H 0.266 0.734 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.386 0.614 23 H 0.341 0.659 24 H 0.345 0.655 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 -11.805 -0.599 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.361 5.361 11 C 0.253 3.747 12 O -0.429 6.429 13 C 0.003 3.997 14 N -0.360 5.360 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.146 4.146 19 H 0.076 0.924 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.219 0.781 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.205 -12.505 -0.812 14.455 hybrid contribution 0.332 2.117 0.211 2.153 sum 7.537 -10.388 -0.601 12.849 Atomic orbital electron populations 1.69976 1.06145 1.27378 1.48717 1.24961 0.94925 0.99510 0.94593 0.86399 0.79605 0.82547 0.78273 1.20402 1.20949 1.19724 1.21208 0.93202 0.90451 1.53483 0.91951 1.19110 0.88312 0.82021 0.97698 1.46520 1.10908 1.06419 1.72286 1.21574 0.90368 0.85235 0.77566 1.90632 1.17017 1.84749 1.50531 1.21757 0.88343 0.93849 0.95767 1.59081 1.26220 1.43940 1.06783 1.22333 1.01632 0.96805 0.93482 1.22433 0.98942 0.94711 0.99221 1.22296 0.98789 0.97942 0.96679 1.22140 1.01609 0.92528 0.98324 0.92387 0.95571 0.95603 0.78096 0.84526 0.84180 0.91023 0.90710 0.91028 0.91806 0.91746 0.91544 0.90919 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -14.78 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.62 16 10 N -0.71 -14.97 5.45 -61.48 -0.34 -15.30 16 11 C 0.47 9.49 6.59 -10.98 -0.07 9.42 16 12 O -0.55 -13.44 15.55 5.56 0.09 -13.36 16 13 C 0.10 1.49 1.09 -131.64 -0.14 1.35 16 14 N -0.83 -10.47 8.62 0.71 0.01 -10.46 16 15 C -0.10 -1.42 6.06 -25.03 -0.15 -1.57 16 16 C -0.12 -1.32 6.91 -24.70 -0.17 -1.49 16 17 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 18 C -0.11 -1.53 6.08 -25.61 -0.16 -1.68 16 19 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.39 6.95 6.70 -40.82 -0.27 6.67 16 23 H 0.34 4.06 7.45 -39.29 -0.29 3.76 16 24 H 0.34 4.23 9.00 -39.29 -0.35 3.88 16 25 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 26 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.93 7.91 -51.93 -0.41 0.51 16 32 H 0.08 1.37 6.70 -51.93 -0.35 1.02 16 LS Contribution 265.90 15.07 4.01 4.01 Total: -1.00 -31.23 265.90 -6.40 -37.63 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.57 Total: 9.51 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.31 Total: -2.40 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.41 Total: -51.14 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.23 -6.40 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037479443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.188 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds