Wall clock time and date at job start Mon Mar 30 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47087 * 239.99845 * 3 2 1 5 5 H 1.48500 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47041 * 120.00012 * 3 2 1 7 7 C 1.37878 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00138 * 269.99964 * 10 9 7 12 12 O 1.21285 * 120.00120 * 185.94315 * 11 10 9 13 13 C 1.50709 * 120.00174 * 5.94389 * 11 10 9 14 14 C 1.52992 * 109.47181 * 182.77871 * 13 11 10 15 15 N 1.46907 * 109.46999 * 179.97438 * 14 13 11 16 16 C 1.46504 * 119.99624 * 90.00249 * 10 9 7 17 17 C 1.52999 * 117.49323 * 196.39356 * 16 10 9 18 18 C 1.52997 * 117.49780 * 127.73392 * 16 10 9 19 19 H 0.97004 * 120.00219 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.46655 * 59.99893 * 9 7 2 21 21 H 1.09001 * 109.46971 * 300.00758 * 9 7 2 22 22 H 1.09002 * 109.47084 * 302.78583 * 13 11 10 23 23 H 1.09006 * 109.46706 * 62.78311 * 13 11 10 24 24 H 1.09002 * 109.47693 * 300.00339 * 14 13 11 25 25 H 1.09000 * 109.47271 * 60.00292 * 14 13 11 26 26 H 1.00894 * 110.99972 * 56.05092 * 15 14 13 27 27 H 1.00898 * 110.99525 * 180.02562 * 15 14 13 28 28 H 1.08995 * 115.55158 * 342.05949 * 16 10 9 29 29 H 1.08997 * 117.50631 * 359.97438 * 17 16 10 30 30 H 1.08998 * 117.49581 * 145.02355 * 17 16 10 31 31 H 1.08993 * 117.50284 * 214.97569 * 18 16 10 32 32 H 1.08999 * 117.49993 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0015 11 6 2.6401 -4.1254 -1.1658 12 8 3.3424 -5.1142 -1.1687 13 6 2.2561 -3.4701 -2.4675 14 6 2.8206 -4.2834 -3.6339 15 7 2.4458 -3.6449 -4.9027 16 6 2.6800 -4.1689 1.2701 17 6 3.9333 -5.0454 1.2304 18 6 2.5613 -5.6814 1.4674 19 1 -0.4851 0.8401 -0.0004 20 1 0.6241 -2.5575 -0.8881 21 1 0.6247 -2.5563 0.8919 22 1 1.1698 -3.4275 -2.5462 23 1 2.6626 -2.4592 -2.4990 24 1 3.9069 -4.3260 -3.5551 25 1 2.4142 -5.2943 -3.6023 26 1 2.7553 -2.6850 -4.9298 27 1 2.8068 -4.1639 -5.6891 28 1 2.5371 -3.5345 2.1449 29 1 4.4028 -5.2087 0.2603 30 1 4.6147 -4.9880 2.0792 31 1 2.3406 -6.0422 2.4720 32 1 2.1280 -6.2627 0.6535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038099446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:52 Heat of formation + Delta-G solvation = -8.322784 kcal Electronic energy + Delta-G solvation = -14458.445594 eV Core-core repulsion = 12033.938671 eV Total energy + Delta-G solvation = -2424.506923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61998 -36.09856 -34.61860 -34.01260 -32.17566 -28.91598 -27.04216 -23.39551 -22.78656 -21.81625 -21.04650 -18.33114 -16.69907 -16.23309 -15.69562 -15.38103 -14.86056 -14.48909 -14.20526 -13.30544 -13.06049 -12.71696 -12.39165 -12.10402 -11.70018 -11.28104 -11.15160 -10.94536 -10.81757 -10.68677 -10.45635 -10.22994 -9.71251 -9.61398 -8.74097 -8.53850 -8.49010 -7.52312 -6.19314 -4.27473 3.22700 3.27482 3.28317 3.33543 3.80817 4.31159 4.55328 4.81759 5.12896 5.33153 5.46842 5.51038 5.57183 5.66359 5.79841 6.11808 6.14420 6.28002 6.36420 6.46666 6.58403 6.79053 6.92078 7.18036 7.29873 7.58699 7.62345 7.74994 8.03180 8.32300 8.77534 9.00231 9.40365 10.87112 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.011523 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.999221 B = 2429.369686 C = 3325.287910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.239 3.761 10 N -0.567 5.567 11 C 0.518 3.482 12 O -0.572 6.572 13 C -0.133 4.133 14 C 0.079 3.921 15 N -0.853 5.853 16 C 0.088 3.912 17 C -0.199 4.199 18 C -0.195 4.195 19 H 0.266 0.734 20 H 0.042 0.958 21 H 0.037 0.963 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.341 0.659 27 H 0.338 0.662 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -5.279 -2.561 7.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.119 3.881 10 N -0.295 5.295 11 C 0.308 3.692 12 O -0.455 6.455 13 C -0.173 4.173 14 C -0.052 4.052 15 N -0.382 5.382 16 C -0.018 4.018 17 C -0.237 4.237 18 C -0.234 4.234 19 H 0.076 0.924 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.463 -5.761 -2.319 7.111 hybrid contribution 1.330 1.267 0.048 1.838 sum 4.793 -4.494 -2.271 6.952 Atomic orbital electron populations 1.69911 1.05999 1.27469 1.49427 1.24942 0.94850 0.99261 0.94699 0.86563 0.79538 0.82606 0.78792 1.20102 1.21114 1.20174 1.21448 0.93540 0.90461 1.52389 0.92142 1.19477 0.87294 0.82410 0.98912 1.47681 1.44140 1.34527 1.03161 1.20514 0.79496 0.83398 0.85831 1.90431 1.40331 1.27034 1.87693 1.21561 1.03780 1.00868 0.91102 1.21487 0.97619 0.97952 0.88160 1.58693 1.68510 1.06908 1.04108 1.21540 1.00808 0.90723 0.88694 1.23749 0.91371 1.03740 1.04826 1.23186 1.01597 0.96954 1.01641 0.92402 0.94002 0.94481 0.88449 0.88169 0.95151 0.90935 0.84711 0.85046 0.85754 0.84833 0.90228 0.89497 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -13.94 9.28 -34.44 -0.32 -14.26 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.24 5.70 4.96 -5.19 -0.03 5.67 16 10 N -0.57 -12.18 2.82 -167.47 -0.47 -12.65 16 11 C 0.52 10.76 7.46 -10.99 -0.08 10.68 16 12 O -0.57 -12.25 11.73 5.55 0.07 -12.19 16 13 C -0.13 -2.47 4.74 -27.88 -0.13 -2.60 16 14 C 0.08 1.26 6.08 -3.82 -0.02 1.23 16 15 N -0.85 -11.64 9.62 -10.37 -0.10 -11.74 16 16 C 0.09 1.71 6.60 -67.93 -0.45 1.26 16 17 C -0.20 -3.57 9.63 -26.69 -0.26 -3.83 16 18 C -0.19 -3.37 9.88 -26.69 -0.26 -3.64 16 19 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 20 H 0.04 1.03 6.41 -51.93 -0.33 0.70 16 21 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 22 H 0.10 1.86 7.08 -51.93 -0.37 1.49 16 23 H 0.10 1.94 8.04 -51.93 -0.42 1.52 16 24 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 25 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 26 H 0.34 4.37 8.99 -39.29 -0.35 4.01 16 27 H 0.34 3.75 9.08 -39.29 -0.36 3.40 16 28 H 0.12 2.34 8.14 -51.93 -0.42 1.91 16 29 H 0.13 2.68 5.22 -52.12 -0.27 2.41 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.71 7.60 -51.93 -0.39 1.32 16 LS Contribution 269.65 15.07 4.06 4.06 Total: -1.00 -27.84 269.65 -6.95 -34.79 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.57 Total: 9.90 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.65 Total: -3.86 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.16 Total: -48.09 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.84 -6.95 -34.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.467 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds