Wall clock time and date at job start Mon Mar 30 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00088 * 2 1 4 4 H 1.48503 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00206 * 3 2 1 6 6 H 1.48505 * 109.47095 * 60.00159 * 3 2 1 7 7 C 1.37886 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47281 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47513 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00187 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.40373 * 35.16911 * 12 11 10 14 14 C 1.53069 * 109.40422 * 154.99615 * 12 11 10 15 15 C 1.53348 * 108.45717 * 168.92335 * 14 12 11 16 16 C 1.52917 * 108.66818 * 292.51314 * 15 14 12 17 17 N 1.45752 * 110.50839 * 50.72480 * 16 15 14 18 18 C 1.33349 * 124.10674 * 340.91191 * 17 16 15 19 19 O 1.21280 * 118.25096 * 182.26647 * 18 17 16 20 20 H 0.97001 * 120.00117 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47672 * 59.99817 * 9 7 2 22 22 H 1.09000 * 109.47269 * 299.99441 * 9 7 2 23 23 H 1.08999 * 109.46974 * 59.99319 * 10 9 7 24 24 H 1.09008 * 109.46386 * 299.99588 * 10 9 7 25 25 H 1.00897 * 110.99883 * 303.94945 * 11 10 9 26 26 H 1.09002 * 109.67457 * 288.67950 * 14 12 11 27 27 H 1.09004 * 109.67157 * 49.17619 * 14 12 11 28 28 H 1.09009 * 109.59840 * 52.24469 * 15 14 12 29 29 H 1.08996 * 109.60587 * 172.72824 * 15 14 12 30 30 H 1.08997 * 109.28596 * 290.40980 * 16 15 14 31 31 H 1.09009 * 109.13212 * 170.93820 * 16 15 14 32 32 H 0.97004 * 117.95003 * 160.93302 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6622 -0.0015 11 7 1.5108 -4.9343 -0.0032 12 6 2.4352 -6.0759 -0.0036 13 1 3.3159 -5.8290 0.5894 14 6 1.7379 -7.2951 0.6049 15 6 2.6066 -8.5316 0.3442 16 6 2.6118 -8.8183 -1.1579 17 7 2.9457 -7.6131 -1.9066 18 6 2.8524 -6.3773 -1.4145 19 8 3.1184 -5.4468 -2.1455 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6241 -2.5575 0.8880 23 1 2.8713 -3.6048 0.8890 24 1 2.8725 -3.6040 -0.8911 25 1 0.8736 -4.9850 0.7774 26 1 1.6175 -7.1510 1.6786 27 1 0.7608 -7.4287 0.1407 28 1 3.6250 -8.3412 0.6834 29 1 2.1946 -9.3874 0.8788 30 1 1.6253 -9.1689 -1.4608 31 1 3.3502 -9.5913 -1.3715 32 1 3.2549 -7.7165 -2.8202 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050396488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:27 Heat of formation + Delta-G solvation = -76.799938 kcal Electronic energy + Delta-G solvation = -14088.221082 eV Core-core repulsion = 11660.744766 eV Total energy + Delta-G solvation = -2427.476315 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.32988 -37.58225 -37.17732 -35.15416 -33.14772 -31.30732 -28.95064 -26.07132 -24.78811 -23.40853 -22.34525 -20.00465 -18.57487 -18.23284 -17.50295 -16.74487 -16.50260 -15.71990 -15.48723 -15.14349 -14.99511 -14.46752 -14.26702 -14.11486 -13.29571 -13.04787 -12.84845 -12.58643 -12.28541 -12.20683 -12.01974 -11.77493 -11.43931 -11.21857 -10.76604 -10.58571 -9.98572 -9.36291 -8.22172 -6.33674 1.37787 1.39867 1.53252 1.65265 2.35749 2.40039 3.10716 3.30148 3.67230 3.80191 3.92192 4.14088 4.27724 4.48417 4.59324 4.64818 4.79058 4.87352 5.03652 5.06436 5.08305 5.30645 5.42260 5.64202 5.75495 5.93723 6.05438 6.20542 6.35379 6.55980 6.82287 7.32665 7.35141 8.90588 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065081 B = 0.005925 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.133077 B = 4724.259905 C = 4916.265894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.035 3.965 10 C 0.084 3.916 11 N -0.684 5.684 12 C 0.071 3.929 13 H 0.072 0.928 14 C -0.120 4.120 15 C -0.128 4.128 16 C 0.103 3.897 17 N -0.714 5.714 18 C 0.516 3.484 19 O -0.597 6.597 20 H 0.265 0.735 21 H -0.013 1.013 22 H -0.001 1.001 23 H 0.021 0.979 24 H 0.052 0.948 25 H 0.352 0.648 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -21.134 2.567 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.002 4.002 10 C -0.044 4.044 11 N -0.318 5.318 12 C -0.042 4.042 13 H 0.089 0.911 14 C -0.157 4.157 15 C -0.166 4.166 16 C -0.020 4.020 17 N -0.366 5.366 18 C 0.302 3.698 19 O -0.477 6.477 20 H 0.074 0.926 21 H 0.005 0.995 22 H 0.017 0.983 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.978 -20.555 1.764 21.223 hybrid contribution 0.558 1.167 0.274 1.322 sum 5.536 -19.388 2.038 20.266 Atomic orbital electron populations 1.70112 1.07786 1.27834 1.51392 1.25995 0.95850 1.03404 0.94435 0.85330 0.78843 0.78377 0.78051 1.18888 1.20288 1.19607 1.21609 0.93364 0.92410 1.51086 0.92679 1.18887 0.94182 0.92254 0.94905 1.21881 0.95711 0.88192 0.98643 1.60088 1.19948 1.01090 1.50636 1.21494 0.96942 0.93650 0.92095 0.91073 1.21891 0.99700 0.92085 1.02072 1.21907 1.00924 0.98482 0.95311 1.21730 1.02748 0.85498 0.92012 1.45531 1.67413 1.05781 1.17912 1.20593 0.75980 0.82726 0.90471 1.90727 1.51499 1.45062 1.60380 0.92609 0.99470 0.98256 0.96049 0.92913 0.82746 0.88909 0.90319 0.90792 0.86140 0.90338 0.87586 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.26 13.29 21.45 0.28 -58.98 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 46.62 29.54 68.60 2.03 48.65 16 4 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.55 -33.73 9.11 25.60 0.23 -33.50 16 8 H 0.05 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.05 5.23 29.85 0.16 2.20 16 10 C 0.08 4.08 5.30 86.31 0.46 4.53 16 11 N -0.68 -26.61 6.20 -496.18 -3.08 -29.69 16 12 C 0.07 2.13 2.76 44.03 0.12 2.25 16 13 H 0.07 2.12 7.80 -2.38 -0.02 2.10 16 14 C -0.12 -2.18 5.29 30.73 0.16 -2.01 16 15 C -0.13 -1.41 6.02 30.68 0.18 -1.22 16 16 C 0.10 1.20 7.17 86.49 0.62 1.82 16 17 N -0.71 -15.77 5.45 -467.32 -2.55 -18.32 16 18 C 0.52 17.20 7.44 87.72 0.65 17.85 16 19 O -0.60 -27.17 15.68 -3.03 -0.05 -27.22 16 20 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 21 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 22 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 23 H 0.02 0.98 8.05 -2.39 -0.02 0.96 16 24 H 0.05 2.83 6.43 -2.38 -0.02 2.82 16 25 H 0.35 12.20 8.36 -89.70 -0.75 11.45 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.50 8.13 -2.38 -0.02 1.48 16 28 H 0.07 0.84 8.12 -2.38 -0.02 0.82 16 29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.40 8.19 8.80 -92.71 -0.82 7.37 16 Total: -1.00 -80.31 265.85 -0.75 -81.06 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -0.45 Total: 12.04 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 3.05 Total: -7.55 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -5.34 Total: -106.98 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -80.31 -0.75 -81.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050396488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.264 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds