Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48500 * 109.47531 * 240.00298 * 3 2 1 5 5 H 1.48499 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46968 * 120.00517 * 3 2 1 7 7 C 1.37877 * 120.00486 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99483 * 359.97438 * 7 2 1 10 10 N 1.46509 * 109.46736 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99637 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00075 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99803 * 179.97438 * 11 10 9 14 14 N 1.46895 * 109.46892 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99697 * 179.97438 * 14 13 11 16 16 C 1.53786 * 113.61279 * 254.13512 * 15 14 13 17 17 C 1.53962 * 87.01719 * 220.04907 * 16 15 14 18 18 C 1.53781 * 113.61285 * 156.52856 * 15 14 13 19 19 H 0.96997 * 119.99945 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47372 * 59.99917 * 9 7 2 21 21 H 1.08999 * 109.46611 * 299.99672 * 9 7 2 22 22 H 0.97002 * 120.00160 * 359.97438 * 10 9 7 23 23 H 1.08998 * 109.47351 * 59.99761 * 13 11 10 24 24 H 1.09009 * 109.46866 * 299.99768 * 13 11 10 25 25 H 1.00904 * 111.00413 * 56.04845 * 14 13 11 26 26 H 1.08993 * 112.85276 * 25.33331 * 15 14 13 27 27 H 1.09000 * 113.61666 * 334.56695 * 16 15 14 28 28 H 1.09000 * 113.61138 * 105.47366 * 16 15 14 29 29 H 1.08997 * 113.53543 * 270.80998 * 17 16 15 30 30 H 1.09004 * 113.66374 * 139.93102 * 17 16 15 31 31 H 1.09001 * 113.61695 * 254.52859 * 18 15 14 32 32 H 1.09002 * 113.61213 * 25.34919 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0009 13 6 2.7333 -6.0288 -0.0006 14 7 1.9988 -7.3009 0.0008 15 6 2.9233 -8.4426 -0.0004 16 6 3.0096 -9.1640 -1.3558 17 6 3.0456 -10.4821 -0.5610 18 6 2.3074 -9.7345 0.5620 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5570 0.8897 22 1 3.1569 -3.4354 -0.0009 23 1 3.3606 -5.9709 0.8889 24 1 3.3592 -5.9711 -0.8912 25 1 1.3615 -7.3514 -0.7799 26 1 3.8958 -8.2001 0.4279 27 1 2.1163 -9.0484 -1.9696 28 1 3.9298 -8.9575 -1.9024 29 1 4.0522 -10.7979 -0.2871 30 1 2.4582 -11.2815 -1.0128 31 1 2.6614 -9.9881 1.5613 32 1 1.2217 -9.7746 0.4748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052210477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -25.883475 kcal Electronic energy + Delta-G solvation = -13563.935748 eV Core-core repulsion = 11138.667336 eV Total energy + Delta-G solvation = -2425.268412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.32862 -38.38275 -34.25834 -33.58833 -32.28693 -28.07582 -26.08213 -25.69301 -23.45350 -22.17950 -20.04839 -19.42848 -17.14654 -16.09777 -15.91551 -15.32673 -15.06850 -14.67327 -14.33653 -13.58139 -13.18165 -12.83464 -12.55380 -12.25845 -12.17595 -11.89919 -11.46393 -11.13065 -10.97231 -10.85481 -10.60328 -10.50229 -10.30880 -9.40013 -9.00300 -8.71877 -8.26765 -7.84496 -6.15378 -4.22524 3.25833 3.30554 3.32102 3.41500 3.86744 4.31485 4.44478 4.52191 4.62277 4.78970 4.88407 5.20439 5.36055 5.44635 5.52217 5.55610 5.65048 5.65961 5.72376 5.90435 6.03584 6.21200 7.03080 7.33727 7.43967 7.47555 7.54062 7.68853 7.98696 8.65530 8.80096 9.14161 9.44229 10.94828 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.092087 B = 0.004708 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.987680 B = 5945.480369 C = 6112.950630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.495 3.505 12 O -0.545 6.545 13 C 0.039 3.961 14 N -0.662 5.662 15 C 0.066 3.934 16 C -0.173 4.173 17 C -0.142 4.142 18 C -0.129 4.129 19 H 0.266 0.734 20 H 0.026 0.974 21 H 0.027 0.973 22 H 0.390 0.610 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.352 0.648 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.743 -15.463 -1.344 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.279 3.721 12 O -0.423 6.423 13 C -0.093 4.093 14 N -0.294 5.294 15 C -0.045 4.045 16 C -0.212 4.212 17 C -0.180 4.180 18 C -0.167 4.167 19 H 0.076 0.924 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.222 0.778 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.592 -15.440 -0.658 17.218 hybrid contribution 1.261 1.095 -0.920 1.907 sum 8.853 -14.345 -1.578 16.931 Atomic orbital electron populations 1.69966 1.06117 1.27410 1.48810 1.24955 0.94914 0.99442 0.94702 0.86471 0.79410 0.82320 0.78673 1.20087 1.21060 1.20058 1.21200 0.93222 0.90506 1.53330 0.91961 1.19090 0.88318 0.81933 0.97712 1.46452 1.11057 1.06138 1.72752 1.20401 0.89575 0.84274 0.77805 1.90661 1.16727 1.84734 1.50154 1.21882 0.95727 0.89605 1.02102 1.60089 1.18258 0.99802 1.51215 1.23099 0.95884 0.89941 0.95530 1.23729 1.02242 0.97580 0.97654 1.22743 1.00791 0.96542 0.97924 1.23040 1.00874 0.94723 0.98083 0.92385 0.95616 0.95528 0.77804 0.88671 0.92857 0.82708 0.88621 0.89880 0.91675 0.90349 0.91418 0.91471 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.73 5.43 -5.19 -0.03 6.71 16 10 N -0.71 -15.20 5.55 -61.46 -0.34 -15.54 16 11 C 0.50 10.04 7.87 -10.98 -0.09 9.95 16 12 O -0.54 -13.42 16.20 5.55 0.09 -13.33 16 13 C 0.04 0.57 6.02 -4.98 -0.03 0.54 16 14 N -0.66 -9.41 6.24 -107.13 -0.67 -10.07 16 15 C 0.07 0.72 4.16 -66.89 -0.28 0.44 16 16 C -0.17 -1.61 7.72 -25.82 -0.20 -1.81 16 17 C -0.14 -1.18 8.09 -25.82 -0.21 -1.39 16 18 C -0.13 -1.28 7.88 -25.92 -0.20 -1.48 16 19 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 23 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 24 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.35 5.20 7.91 -39.29 -0.31 4.89 16 26 H 0.10 0.95 7.88 -51.93 -0.41 0.54 16 27 H 0.08 0.80 7.83 -51.93 -0.41 0.40 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -31.92 275.14 -7.31 -39.23 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.80 Total: 5.84 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.45 Total: -0.59 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.27 Total: -51.20 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.92 -7.31 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052210477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.348 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds