Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48500 * 109.47531 * 240.00298 * 3 2 1 5 5 H 1.48499 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46968 * 120.00517 * 3 2 1 7 7 C 1.37877 * 120.00486 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99483 * 359.97438 * 7 2 1 10 10 N 1.46509 * 109.46736 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99637 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00075 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99803 * 179.97438 * 11 10 9 14 14 N 1.46895 * 109.46892 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99697 * 179.97438 * 14 13 11 16 16 C 1.53786 * 113.61279 * 254.13512 * 15 14 13 17 17 C 1.53962 * 87.01719 * 220.04907 * 16 15 14 18 18 C 1.53781 * 113.61285 * 156.52856 * 15 14 13 19 19 H 0.96997 * 119.99945 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47372 * 59.99917 * 9 7 2 21 21 H 1.08999 * 109.46611 * 299.99672 * 9 7 2 22 22 H 0.97002 * 120.00160 * 359.97438 * 10 9 7 23 23 H 1.08998 * 109.47351 * 59.99761 * 13 11 10 24 24 H 1.09009 * 109.46866 * 299.99768 * 13 11 10 25 25 H 1.00904 * 111.00413 * 56.04845 * 14 13 11 26 26 H 1.08993 * 112.85276 * 25.33331 * 15 14 13 27 27 H 1.09000 * 113.61666 * 334.56695 * 16 15 14 28 28 H 1.09000 * 113.61138 * 105.47366 * 16 15 14 29 29 H 1.08997 * 113.53543 * 270.80998 * 17 16 15 30 30 H 1.09004 * 113.66374 * 139.93102 * 17 16 15 31 31 H 1.09001 * 113.61695 * 254.52859 * 18 15 14 32 32 H 1.09002 * 113.61213 * 25.34919 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0009 13 6 2.7333 -6.0288 -0.0006 14 7 1.9988 -7.3009 0.0008 15 6 2.9233 -8.4426 -0.0004 16 6 3.0096 -9.1640 -1.3558 17 6 3.0456 -10.4821 -0.5610 18 6 2.3074 -9.7345 0.5620 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5570 0.8897 22 1 3.1569 -3.4354 -0.0009 23 1 3.3606 -5.9709 0.8889 24 1 3.3592 -5.9711 -0.8912 25 1 1.3615 -7.3514 -0.7799 26 1 3.8958 -8.2001 0.4279 27 1 2.1163 -9.0484 -1.9696 28 1 3.9298 -8.9575 -1.9024 29 1 4.0522 -10.7979 -0.2871 30 1 2.4582 -11.2815 -1.0128 31 1 2.6614 -9.9881 1.5613 32 1 1.2217 -9.7746 0.4748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052210477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -50.494372 kcal Electronic energy + Delta-G solvation = -13565.002956 eV Core-core repulsion = 11138.667336 eV Total energy + Delta-G solvation = -2426.335620 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64051 -39.59669 -36.16632 -34.78848 -34.31150 -29.88635 -27.56579 -26.44109 -24.78950 -23.77128 -21.48333 -20.56346 -18.89387 -17.59708 -17.27174 -16.77437 -16.55551 -16.11167 -15.76922 -15.01253 -14.58472 -14.25240 -13.93943 -13.77608 -13.34290 -13.11551 -12.94249 -12.88646 -12.65506 -12.23667 -11.87856 -11.51246 -11.36145 -11.27566 -10.79167 -10.68377 -9.82927 -9.27900 -8.28906 -6.46066 1.43387 1.47717 1.55959 1.78501 2.30140 2.51774 3.05786 3.31904 3.75654 3.82603 3.97414 4.04879 4.10185 4.41677 4.46955 4.66711 4.85931 4.90499 5.08001 5.10840 5.15276 5.23758 5.27865 5.45541 5.48911 5.69650 5.84800 6.11220 6.34417 6.65107 6.94196 7.23637 7.51978 8.83225 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.092087 B = 0.004708 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.987680 B = 5945.480369 C = 6112.950630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.708 5.708 11 C 0.490 3.510 12 O -0.595 6.595 13 C 0.057 3.943 14 N -0.683 5.683 15 C 0.061 3.939 16 C -0.170 4.170 17 C -0.131 4.131 18 C -0.134 4.134 19 H 0.269 0.731 20 H -0.013 1.013 21 H -0.015 1.015 22 H 0.409 0.591 23 H 0.121 0.879 24 H 0.085 0.915 25 H 0.345 0.655 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.671 -15.767 -1.453 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.359 5.359 11 C 0.278 3.722 12 O -0.476 6.476 13 C -0.075 4.075 14 N -0.315 5.315 15 C -0.048 4.048 16 C -0.209 4.209 17 C -0.169 4.169 18 C -0.173 4.173 19 H 0.078 0.922 20 H 0.004 0.996 21 H 0.003 0.997 22 H 0.245 0.755 23 H 0.139 0.861 24 H 0.103 0.897 25 H 0.164 0.836 26 H 0.130 0.870 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.582 -15.785 -0.764 19.019 hybrid contribution 0.298 1.105 -0.875 1.441 sum 10.880 -14.680 -1.639 18.345 Atomic orbital electron populations 1.70137 1.08351 1.28657 1.49918 1.26095 0.95774 1.04001 0.93801 0.85186 0.77884 0.76473 0.79538 1.18561 1.21135 1.18617 1.21609 0.94358 0.90564 1.53020 0.89684 1.18528 0.88765 0.84470 0.93953 1.46186 1.11185 1.05513 1.73039 1.21531 0.90009 0.85036 0.75667 1.90637 1.19486 1.85446 1.52020 1.21812 0.94028 0.87033 1.04666 1.60121 1.19409 1.00615 1.51317 1.23291 0.95893 0.88786 0.96864 1.23682 1.02421 0.97817 0.96982 1.22722 1.01459 0.96109 0.96569 1.23056 1.00197 0.94901 0.99105 0.92238 0.99554 0.99713 0.75528 0.86132 0.89728 0.83557 0.87007 0.90719 0.90536 0.88702 0.90892 0.90902 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -30.56 9.28 25.60 0.24 -30.32 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.85 5.43 85.63 0.46 15.31 16 10 N -0.71 -30.13 5.55 -466.76 -2.59 -32.72 16 11 C 0.49 19.89 7.87 87.66 0.69 20.58 16 12 O -0.59 -30.37 16.20 -3.04 -0.05 -30.42 16 13 C 0.06 1.51 6.02 85.56 0.52 2.03 16 14 N -0.68 -18.58 6.24 -492.84 -3.07 -21.65 16 15 C 0.06 1.18 4.16 45.44 0.19 1.37 16 16 C -0.17 -2.78 7.72 31.18 0.24 -2.54 16 17 C -0.13 -1.84 8.09 31.18 0.25 -1.59 16 18 C -0.13 -2.45 7.88 31.12 0.25 -2.20 16 19 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 21 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 22 H 0.41 14.07 8.32 -92.71 -0.77 13.30 16 23 H 0.12 2.68 8.13 -2.39 -0.02 2.66 16 24 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.34 10.13 7.91 -89.69 -0.71 9.42 16 26 H 0.11 1.81 7.88 -2.39 -0.02 1.79 16 27 H 0.07 1.35 7.83 -2.39 -0.02 1.33 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.62 275.14 -0.47 -72.09 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.36 Total: 21.61 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 3.30 Total: 3.26 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -5.38 Total: -110.92 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.05 Total: -30.42 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -71.62 -0.47 -72.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052210477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.593 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds