Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48502 * 109.46835 * 239.99952 * 3 2 1 5 5 H 1.48501 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47470 * 119.99816 * 3 2 1 7 7 C 1.37869 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47383 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47680 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00356 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99736 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00059 * 179.97438 * 12 11 10 15 15 N 1.46894 * 109.46862 * 179.97438 * 14 12 11 16 16 C 1.46906 * 110.99682 * 179.97438 * 15 14 12 17 17 C 1.53002 * 117.49799 * 223.74616 * 16 15 14 18 18 C 1.53000 * 117.49653 * 155.09047 * 16 15 14 19 19 H 0.97003 * 119.99568 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47437 * 60.00130 * 9 7 2 21 21 H 1.09006 * 109.47473 * 299.99948 * 9 7 2 22 22 H 1.08997 * 109.46958 * 59.99382 * 10 9 7 23 23 H 1.09006 * 109.46759 * 300.00367 * 10 9 7 24 24 H 0.97002 * 119.99211 * 359.97438 * 11 10 9 25 25 H 1.09001 * 109.46941 * 60.00040 * 14 12 11 26 26 H 1.09003 * 109.46975 * 299.99871 * 14 12 11 27 27 H 1.00906 * 111.00209 * 56.05120 * 15 14 12 28 28 H 1.08998 * 115.54836 * 9.41750 * 16 15 14 29 29 H 1.09000 * 117.49996 * 0.02562 * 17 16 15 30 30 H 1.08999 * 117.49664 * 145.02062 * 17 16 15 31 31 H 1.09000 * 117.49640 * 214.98222 * 18 16 15 32 32 H 1.08999 * 117.49942 * 359.97356 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0027 13 8 3.3995 -6.0979 0.0040 14 6 1.4333 -7.4031 0.0026 15 7 2.3879 -8.5195 0.0037 16 6 1.6876 -9.8109 0.0043 17 6 2.2123 -10.8987 0.9437 18 6 2.4331 -11.0191 -0.5662 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8713 -3.6038 0.8922 23 1 2.8727 -3.6046 -0.8877 24 1 0.5429 -4.9307 0.0005 25 1 0.8076 -7.4613 -0.8881 26 1 0.8056 -7.4603 0.8920 27 1 3.0222 -8.4522 0.7856 28 1 0.6107 -9.7618 -0.1570 29 1 3.0768 -10.6560 1.5616 30 1 1.4806 -11.5654 1.4000 31 1 1.8466 -11.7649 -1.1027 32 1 3.4430 -10.8556 -0.9424 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138750.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = -22.157044 kcal Electronic energy + Delta-G solvation = -13319.108359 eV Core-core repulsion = 10894.001537 eV Total energy + Delta-G solvation = -2425.106822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.34287 -37.74494 -34.87489 -33.26930 -32.81289 -29.78706 -26.52566 -24.24273 -22.56251 -21.39966 -21.00114 -20.08424 -16.94859 -16.47882 -16.19905 -15.72060 -15.00467 -14.69380 -14.36923 -13.97617 -13.30671 -13.00889 -12.76180 -12.28576 -12.07346 -11.70322 -11.21641 -11.11445 -11.00423 -10.66437 -10.61747 -10.32028 -9.80015 -9.45659 -9.18540 -8.55050 -8.39988 -8.32056 -6.09802 -4.12759 3.00774 3.31238 3.34711 3.36187 3.42604 3.64180 4.16081 4.42265 4.69767 4.76355 4.91210 5.06296 5.27188 5.27963 5.37766 5.43745 5.45567 5.74083 5.96442 6.32609 6.35013 6.73810 6.79861 6.92545 7.17412 7.51137 7.61054 7.88377 8.02169 8.27564 8.66626 8.93104 9.52136 11.01765 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.106093 B = 0.004250 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.857237 B = 6586.352886 C = 6754.091202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.723 5.723 12 C 0.503 3.497 13 O -0.539 6.539 14 C 0.041 3.959 15 N -0.642 5.642 16 C 0.022 3.978 17 C -0.209 4.209 18 C -0.171 4.171 19 H 0.263 0.737 20 H 0.023 0.977 21 H 0.022 0.978 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.397 0.603 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.353 0.647 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 -17.470 1.114 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.374 5.374 12 C 0.288 3.712 13 O -0.416 6.416 14 C -0.091 4.091 15 N -0.274 5.274 16 C -0.089 4.089 17 C -0.248 4.248 18 C -0.209 4.209 19 H 0.072 0.928 20 H 0.041 0.959 21 H 0.040 0.960 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.231 0.769 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.162 -17.280 0.436 17.286 hybrid contribution -0.437 0.899 0.884 1.334 sum -0.275 -16.381 1.320 16.437 Atomic orbital electron populations 1.69948 1.06095 1.26993 1.50330 1.24996 0.94901 0.99417 0.94959 0.86562 0.79513 0.82606 0.78803 1.20083 1.21239 1.20103 1.21023 0.93236 0.90424 1.51456 0.92288 1.19322 0.94201 0.91123 0.97825 1.21713 0.96038 0.81473 1.00772 1.46307 1.10510 1.06524 1.74088 1.20425 0.88383 0.85357 0.77063 1.90680 1.13864 1.87560 1.49529 1.21874 0.94746 0.89660 1.02851 1.59881 1.17890 0.99075 1.50542 1.22429 0.96737 0.85652 1.04054 1.23457 1.03874 1.03760 0.93670 1.23131 1.02692 0.99845 0.95252 0.92783 0.95916 0.95975 0.92632 0.92551 0.76934 0.88042 0.92164 0.82616 0.87155 0.88631 0.88783 0.88738 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.46 5.56 -60.29 -0.33 -12.80 16 12 C 0.50 8.45 7.87 -10.99 -0.09 8.37 16 13 O -0.54 -11.25 16.20 5.56 0.09 -11.16 16 14 C 0.04 0.50 6.02 -4.98 -0.03 0.47 16 15 N -0.64 -7.97 6.41 -107.99 -0.69 -8.66 16 16 C 0.02 0.21 6.31 -67.71 -0.43 -0.21 16 17 C -0.21 -1.74 10.23 -26.69 -0.27 -2.01 16 18 C -0.17 -1.53 10.46 -26.70 -0.28 -1.81 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 20 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.40 5.80 8.47 -40.82 -0.35 5.45 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.35 4.52 8.21 -39.29 -0.32 4.20 16 28 H 0.11 0.92 7.90 -51.93 -0.41 0.51 16 29 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 280.47 15.07 4.23 4.23 Total: -1.00 -31.62 280.47 -7.51 -39.13 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.84 Total: 4.02 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.67 Total: -5.74 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.29 Total: -46.87 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.62 -7.51 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138750.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.974 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds