Wall clock time and date at job start Mon Mar 30 2020 02:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48498 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46980 * 300.00014 * 3 2 1 6 6 H 1.48494 * 109.47162 * 59.99566 * 3 2 1 7 7 C 1.38948 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00040 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99863 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.47730 * 300.00286 * 12 10 9 14 14 C 1.53002 * 109.47106 * 59.99948 * 12 10 9 15 15 C 1.52997 * 109.47415 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47164 * 300.00027 * 15 14 12 17 17 C 1.52999 * 109.46626 * 59.99702 * 16 15 14 18 18 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 19 19 N 1.46906 * 109.46904 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47240 * 179.97438 * 12 10 9 21 21 H 0.97001 * 120.00144 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99463 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.46986 * 59.99785 * 14 12 10 24 24 H 1.09001 * 109.47601 * 300.00508 * 14 12 10 25 25 H 1.09001 * 109.46922 * 180.02562 * 15 14 12 26 26 H 1.09000 * 109.47140 * 59.99976 * 15 14 12 27 27 H 1.08993 * 109.46955 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.47050 * 300.00004 * 16 15 14 29 29 H 1.00892 * 111.00258 * 300.00597 * 19 17 16 30 30 H 1.00904 * 110.99734 * 63.95760 * 19 17 16 31 31 H 1.09000 * 109.47054 * 300.00339 * 20 12 10 32 32 H 1.09001 * 109.46997 * 60.00072 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6175 -4.9205 0.8902 14 6 0.3637 -4.9442 -1.2488 15 6 -0.4008 -6.2695 -1.2486 16 6 0.5939 -7.4321 -1.2491 17 6 1.4739 -7.3507 -0.0002 18 1 0.8476 -7.4088 0.8900 19 7 2.4286 -8.4673 -0.0003 20 6 2.2380 -6.0258 -0.0007 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 0.9900 -4.8866 -2.1391 24 1 -0.3446 -4.1157 -1.2489 25 1 -1.0275 -6.3275 -2.1386 26 1 -1.0271 -6.3275 -0.3584 27 1 0.0492 -8.3762 -1.2494 28 1 1.2201 -7.3741 -2.1394 29 1 1.9476 -9.3542 0.0000 30 1 3.0632 -8.4004 -0.7820 31 1 2.8640 -5.9680 -0.8912 32 1 2.8654 -5.9681 0.8888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070502908.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:16 Heat of formation + Delta-G solvation = -67.901811 kcal Electronic energy + Delta-G solvation = -14354.511312 eV Core-core repulsion = 11927.420848 eV Total energy + Delta-G solvation = -2427.090464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.27040 -37.24062 -33.93334 -33.38058 -31.17544 -30.48212 -27.74394 -25.15246 -22.77068 -21.68517 -19.92210 -18.85477 -17.84358 -16.11006 -15.57505 -15.11173 -14.47356 -14.19612 -13.90697 -13.73669 -13.54399 -12.69894 -12.55229 -12.17804 -11.85936 -11.46941 -11.14316 -11.00614 -10.88233 -10.37221 -10.35444 -10.31530 -10.13247 -10.09289 -9.49568 -8.60267 -8.26735 -7.93703 -6.39600 -3.80100 3.17679 3.28054 3.35649 3.94153 4.18886 4.53800 4.79675 4.91520 5.12031 5.25706 5.35606 5.41674 5.55844 5.63202 5.73090 5.78587 5.86244 6.06418 6.17515 6.24219 6.37735 6.42781 6.57082 6.74037 6.80701 7.20863 7.48059 7.57561 8.09360 8.64152 9.20460 9.58545 10.10180 10.78264 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.060122 B = 0.007104 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.605697 B = 3940.489461 C = 4285.593408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.446 3.554 11 O -0.595 6.595 12 C -0.096 4.096 13 H 0.081 0.919 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.151 4.151 17 C 0.089 3.911 18 H 0.078 0.922 19 N -0.845 5.845 20 C -0.084 4.084 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.335 0.665 30 H 0.339 0.661 31 H 0.064 0.936 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 -11.941 -2.243 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.232 3.768 11 O -0.481 6.481 12 C -0.118 4.118 13 H 0.099 0.901 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.191 4.191 17 C -0.023 4.023 18 H 0.096 0.904 19 N -0.373 5.373 20 C -0.122 4.122 21 H 0.080 0.920 22 H 0.226 0.774 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.952 -11.477 -1.524 11.741 hybrid contribution -0.751 0.665 -0.965 1.392 sum -2.703 -10.813 -2.489 11.420 Atomic orbital electron populations 1.69620 1.05934 1.28005 1.50798 1.25257 0.95622 0.99699 0.97383 0.85814 0.79729 0.81196 0.77691 1.19235 1.20775 1.20750 1.19783 0.93418 0.82392 1.47352 0.87932 1.41912 1.09205 1.04632 1.64000 1.19887 0.88125 0.84896 0.83920 1.90510 1.14055 1.87390 1.56128 1.21116 0.97248 0.94438 0.98987 0.90113 1.21550 0.98372 0.97212 0.97771 1.21470 0.97467 0.94469 1.01734 1.22409 0.98742 0.98340 0.99609 1.21532 0.92449 0.91561 0.96728 0.90398 1.58905 1.22003 1.04804 1.51545 1.21204 0.96875 0.90557 1.03547 0.91954 0.77406 0.91780 0.91188 0.92136 0.91857 0.92632 0.92143 0.85268 0.84866 0.91746 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.52 5.18 -10.96 -0.06 -14.58 16 10 C 0.45 10.80 7.11 -10.99 -0.08 10.72 16 11 O -0.60 -16.62 15.56 5.55 0.09 -16.54 16 12 C -0.10 -1.73 2.53 -91.77 -0.23 -1.96 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.11 -1.75 5.10 -26.73 -0.14 -1.89 16 15 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 16 C -0.15 -1.74 5.49 -26.73 -0.15 -1.88 16 17 C 0.09 1.15 3.24 -67.74 -0.22 0.93 16 18 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 19 N -0.85 -9.78 9.25 -4.69 -0.04 -9.82 16 20 C -0.08 -1.40 4.03 -26.76 -0.11 -1.51 16 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.39 9.71 7.32 -40.82 -0.30 9.41 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 1.14 7.56 -51.93 -0.39 0.75 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.34 3.11 9.04 -39.30 -0.36 2.75 16 30 H 0.34 3.70 8.98 -39.29 -0.35 3.34 16 31 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 LS Contribution 264.08 15.07 3.98 3.98 Total: -1.00 -30.91 264.08 -6.36 -37.27 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.71 Total: 12.82 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.32 Total: -5.31 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.62 Total: -48.48 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.91 -6.36 -37.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502908.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.632 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds