Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48498 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46980 * 300.00014 * 3 2 1 6 6 H 1.48494 * 109.47162 * 59.99566 * 3 2 1 7 7 C 1.38948 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00040 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99863 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.47730 * 300.00286 * 12 10 9 14 14 C 1.53002 * 109.47106 * 59.99948 * 12 10 9 15 15 C 1.52997 * 109.47415 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47164 * 300.00027 * 15 14 12 17 17 C 1.52999 * 109.46626 * 59.99702 * 16 15 14 18 18 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 19 19 N 1.46906 * 109.46904 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47240 * 179.97438 * 12 10 9 21 21 H 0.97001 * 120.00144 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99463 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.46986 * 59.99785 * 14 12 10 24 24 H 1.09001 * 109.47601 * 300.00508 * 14 12 10 25 25 H 1.09001 * 109.46922 * 180.02562 * 15 14 12 26 26 H 1.09000 * 109.47140 * 59.99976 * 15 14 12 27 27 H 1.08993 * 109.46955 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.47050 * 300.00004 * 16 15 14 29 29 H 1.00892 * 111.00258 * 300.00597 * 19 17 16 30 30 H 1.00904 * 110.99734 * 63.95760 * 19 17 16 31 31 H 1.09000 * 109.47054 * 300.00339 * 20 12 10 32 32 H 1.09001 * 109.46997 * 60.00072 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6175 -4.9205 0.8902 14 6 0.3637 -4.9442 -1.2488 15 6 -0.4008 -6.2695 -1.2486 16 6 0.5939 -7.4321 -1.2491 17 6 1.4739 -7.3507 -0.0002 18 1 0.8476 -7.4088 0.8900 19 7 2.4286 -8.4673 -0.0003 20 6 2.2380 -6.0258 -0.0007 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 0.9900 -4.8866 -2.1391 24 1 -0.3446 -4.1157 -1.2489 25 1 -1.0275 -6.3275 -2.1386 26 1 -1.0271 -6.3275 -0.3584 27 1 0.0492 -8.3762 -1.2494 28 1 1.2201 -7.3741 -2.1394 29 1 1.9476 -9.3542 0.0000 30 1 3.0632 -8.4004 -0.7820 31 1 2.8640 -5.9680 -0.8912 32 1 2.8654 -5.9681 0.8888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070502908.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -91.145724 kcal Electronic energy + Delta-G solvation = -14355.519244 eV Core-core repulsion = 11927.420848 eV Total energy + Delta-G solvation = -2428.098395 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85799 -38.80016 -36.02382 -34.56552 -33.18898 -31.80061 -28.91232 -27.10720 -24.28306 -22.82790 -21.18738 -20.59536 -19.89011 -17.77867 -16.80448 -16.69582 -16.19630 -15.80578 -15.40110 -15.18670 -14.71176 -14.40144 -13.87623 -13.64993 -13.40088 -13.09062 -12.92552 -12.45281 -12.26522 -12.12110 -12.04424 -11.57719 -11.52783 -11.44664 -11.42026 -10.25651 -10.03770 -9.50985 -8.49214 -5.98468 1.34870 1.40090 1.54698 2.02145 2.28540 3.12964 3.17807 3.59487 3.81179 3.91655 4.12710 4.22338 4.28578 4.41945 4.50690 4.57456 4.68975 4.71842 5.05865 5.13806 5.16941 5.24183 5.26763 5.39310 5.40626 5.51403 5.97906 6.29031 6.56491 6.68980 7.09505 7.53450 8.08985 8.68417 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.060122 B = 0.007104 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.605697 B = 3940.489461 C = 4285.593408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.568 5.568 10 C 0.438 3.562 11 O -0.639 6.639 12 C -0.086 4.086 13 H 0.098 0.902 14 C -0.106 4.106 15 C -0.106 4.106 16 C -0.145 4.145 17 C 0.099 3.901 18 H 0.085 0.915 19 N -0.852 5.852 20 C -0.077 4.077 21 H 0.279 0.721 22 H 0.397 0.603 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.046 0.954 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -12.829 -2.484 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.204 5.204 10 C 0.226 3.774 11 O -0.527 6.527 12 C -0.108 4.108 13 H 0.116 0.884 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.184 4.184 17 C -0.013 4.013 18 H 0.103 0.897 19 N -0.382 5.382 20 C -0.116 4.116 21 H 0.088 0.912 22 H 0.231 0.769 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.065 0.935 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.353 -12.389 -1.767 12.956 hybrid contribution -0.303 0.935 -0.879 1.318 sum -3.656 -11.454 -2.646 12.311 Atomic orbital electron populations 1.69674 1.06831 1.29344 1.50114 1.26057 0.96570 1.02421 0.96080 0.84863 0.77947 0.76978 0.78479 1.19936 1.19384 1.19402 1.19737 0.92692 0.84231 1.50164 0.90539 1.41966 1.09306 1.04692 1.64436 1.21032 0.88010 0.86473 0.81839 1.90471 1.16293 1.88311 1.57628 1.21104 0.97421 0.91140 1.01130 0.88401 1.21516 0.97784 0.99555 0.95590 1.21452 0.97443 0.92176 1.03383 1.22359 0.98333 0.99322 0.98383 1.21359 0.92271 0.89610 0.98051 0.89716 1.58822 1.22086 1.05260 1.51987 1.21128 0.96495 0.92608 1.01372 0.91177 0.76917 0.93141 0.91992 0.90225 0.90478 0.89664 0.92436 0.83331 0.84465 0.93527 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.34 -19.83 9.68 84.04 0.81 -19.02 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -30.26 5.18 -306.99 -1.59 -31.85 16 10 C 0.44 21.97 7.11 87.66 0.62 22.59 16 11 O -0.64 -37.37 15.56 -3.07 -0.05 -37.42 16 12 C -0.09 -3.12 2.53 -11.54 -0.03 -3.15 16 13 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 14 C -0.11 -3.25 5.10 30.59 0.16 -3.10 16 15 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 16 C -0.14 -2.83 5.49 30.60 0.17 -2.66 16 17 C 0.10 2.34 3.24 44.90 0.15 2.48 16 18 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 19 N -0.85 -17.88 9.25 -168.74 -1.56 -19.45 16 20 C -0.08 -2.60 4.03 30.58 0.12 -2.48 16 21 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 22 H 0.40 20.02 7.32 -92.71 -0.68 19.34 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.99 7.56 -2.39 -0.02 1.97 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.35 5.44 9.04 -89.70 -0.81 4.63 16 30 H 0.34 6.91 8.98 -89.69 -0.81 6.10 16 31 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -68.00 264.08 0.60 -67.40 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -1.16 Total: 33.20 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 2.65 Total: -7.58 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -2.87 Total: -101.21 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.05 Total: -37.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.00 0.60 -67.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502908.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.746 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds