Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48507 * 109.47055 * 270.00071 * 3 2 1 5 5 H 1.48498 * 109.46812 * 29.99633 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99708 * 3 2 1 7 7 C 1.38949 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99803 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00472 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99411 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00395 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.46944 * 59.99782 * 12 10 9 14 14 C 1.53005 * 109.46994 * 300.00349 * 12 10 9 15 15 C 1.52999 * 109.47159 * 299.99266 * 14 12 10 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 19 19 N 1.46901 * 109.46769 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47242 * 179.97438 * 12 10 9 21 21 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99882 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.47360 * 59.99880 * 14 12 10 24 24 H 1.09002 * 109.46935 * 179.97438 * 14 12 10 25 25 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 26 26 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 27 27 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 28 28 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 29 29 H 1.00899 * 111.00094 * 299.99724 * 19 17 16 30 30 H 1.00901 * 111.00367 * 63.95272 * 19 17 16 31 31 H 1.08993 * 109.47194 * 299.99839 * 20 12 10 32 32 H 1.09002 * 109.46695 * 179.97438 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 1 0.6168 -4.9209 -0.8897 14 6 0.3646 -4.9437 1.2497 15 6 1.2447 -4.8625 2.4986 16 6 2.2389 -6.0254 2.4984 17 6 3.1181 -5.9445 1.2489 18 1 3.6631 -5.0006 1.2485 19 7 4.0723 -7.0614 1.2485 20 6 2.2381 -6.0259 -0.0007 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3907 0.0002 23 1 -0.3437 -4.1153 1.2497 24 1 -0.1807 -5.8875 1.2498 25 1 0.6183 -4.9196 3.3887 26 1 1.7897 -3.9185 2.4982 27 1 1.6939 -6.9694 2.4988 28 1 2.8662 -5.9672 3.3880 29 1 4.6656 -7.0305 2.0640 30 1 3.5927 -7.9468 1.1837 31 1 2.8640 -5.9682 -0.8911 32 1 1.6930 -6.9698 0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070502909.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = -61.736973 kcal Electronic energy + Delta-G solvation = -14755.097338 eV Core-core repulsion = 12328.274202 eV Total energy + Delta-G solvation = -2426.823136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.53089 -36.70911 -33.91058 -33.23511 -31.11282 -30.42431 -27.52193 -25.13348 -22.59860 -21.55460 -20.34210 -18.47883 -17.67033 -15.78967 -15.40599 -15.29105 -14.52309 -14.21148 -13.78524 -13.35825 -13.26514 -12.80390 -12.31208 -11.87827 -11.67597 -11.57293 -11.24390 -11.07844 -10.60855 -10.42261 -10.33738 -10.25476 -10.08035 -9.78320 -9.42063 -8.33831 -8.13186 -7.90670 -6.39505 -3.79847 3.18928 3.27458 3.33350 3.94899 4.19486 4.80892 4.89331 5.11888 5.28250 5.32572 5.44998 5.61063 5.66607 5.84022 5.91603 5.96012 5.98632 6.13756 6.30844 6.42413 6.50518 6.58532 6.66852 6.76247 7.03394 7.50854 7.57444 7.76147 8.09476 8.64937 9.20811 9.58947 10.10861 10.78253 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047837 B = 0.008500 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.185437 B = 3293.152210 C = 3480.949972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.449 3.551 11 O -0.588 6.588 12 C -0.103 4.103 13 H 0.081 0.919 14 C -0.108 4.108 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.075 3.925 18 H 0.120 0.880 19 N -0.843 5.843 20 C -0.080 4.080 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.334 0.666 30 H 0.327 0.673 31 H 0.071 0.929 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 -9.854 3.637 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.235 3.765 11 O -0.474 6.474 12 C -0.125 4.125 13 H 0.100 0.900 14 C -0.146 4.146 15 C -0.155 4.155 16 C -0.187 4.187 17 C -0.035 4.035 18 H 0.138 0.862 19 N -0.370 5.370 20 C -0.118 4.118 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.238 -9.348 2.951 9.806 hybrid contribution -0.856 0.577 0.911 1.377 sum -0.619 -8.771 3.862 9.604 Atomic orbital electron populations 1.69611 1.05919 1.28079 1.50735 1.25246 0.95603 0.99670 0.97417 0.85888 0.79245 0.80959 0.78384 1.20433 1.20973 1.19452 1.19719 0.93363 0.82388 1.47427 0.87966 1.41913 1.09176 1.04623 1.63980 1.19817 0.88156 0.84794 0.83739 1.90445 1.13904 1.87003 1.56011 1.21217 0.97393 0.95037 0.98834 0.90041 1.21506 0.97386 1.01679 0.94006 1.21456 0.97466 0.99367 0.97227 1.22378 0.98606 0.98357 0.99336 1.21936 0.92394 0.96647 0.92531 0.86224 1.58972 1.25145 1.05365 1.47500 1.21169 0.96217 0.95547 0.98868 0.91926 0.77475 0.91366 0.92142 0.92587 0.90965 0.93088 0.92866 0.85386 0.86192 0.91032 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.20 5.18 -10.96 -0.06 -14.26 16 10 C 0.45 10.50 5.59 -10.99 -0.06 10.44 16 11 O -0.59 -15.61 13.23 5.55 0.07 -15.54 16 12 C -0.10 -1.85 3.01 -91.77 -0.28 -2.13 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.11 -1.71 5.36 -26.73 -0.14 -1.85 16 15 C -0.12 -1.89 5.70 -26.73 -0.15 -2.04 16 16 C -0.15 -2.16 5.49 -26.73 -0.15 -2.30 16 17 C 0.08 1.27 2.95 -67.68 -0.20 1.07 16 18 H 0.12 2.55 5.51 -51.93 -0.29 2.26 16 19 N -0.84 -12.04 9.25 -4.64 -0.04 -12.09 16 20 C -0.08 -1.34 4.64 -26.70 -0.12 -1.47 16 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.39 9.59 7.32 -40.82 -0.30 9.29 16 23 H 0.07 1.12 7.56 -51.93 -0.39 0.73 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.41 7.22 -51.93 -0.37 1.04 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.33 4.24 9.04 -39.29 -0.36 3.88 16 30 H 0.33 3.94 8.98 -39.29 -0.35 3.59 16 31 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 257.55 15.07 3.88 3.88 Total: -1.00 -29.77 257.55 -6.32 -36.09 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -4.53 Total: 15.94 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.34 Total: -6.27 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.62 Total: -50.25 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.07 Total: -15.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.77 -6.32 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502909.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.652 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds