Wall clock time and date at job start Mon Mar 30 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99892 * 2 1 4 4 H 1.48500 * 109.46755 * 269.99629 * 3 2 1 5 5 H 1.48498 * 109.47247 * 29.99683 * 3 2 1 6 6 H 1.48496 * 109.47178 * 149.99679 * 3 2 1 7 7 C 1.38949 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99447 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99521 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00709 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47247 * 59.99885 * 12 10 9 14 14 C 1.52997 * 109.47265 * 299.99699 * 12 10 9 15 15 C 1.53002 * 109.47092 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47343 * 60.00063 * 15 14 12 17 17 C 1.52997 * 109.46975 * 300.00008 * 16 15 14 18 18 H 1.09000 * 109.47140 * 299.99612 * 17 16 15 19 19 N 1.46906 * 109.46907 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47269 * 60.00159 * 17 16 15 21 21 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00210 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.47140 * 300.00252 * 14 12 10 24 24 H 1.09002 * 109.47045 * 60.00159 * 14 12 10 25 25 H 1.09004 * 109.46930 * 180.02562 * 15 14 12 26 26 H 1.09004 * 109.47059 * 299.99666 * 15 14 12 27 27 H 1.09001 * 109.47372 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.46870 * 59.99786 * 16 15 14 29 29 H 1.00896 * 111.00309 * 59.99727 * 19 17 16 30 30 H 1.00902 * 110.99923 * 183.95891 * 19 17 16 31 31 H 1.09000 * 109.47486 * 59.99665 * 20 17 16 32 32 H 1.09001 * 109.47362 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 1 0.6182 -4.9208 -0.8897 14 6 0.3628 -4.9437 1.2492 15 6 -0.4017 -6.2690 1.2489 16 6 0.5929 -7.4316 1.2506 17 6 1.4739 -7.3508 0.0024 18 1 0.8483 -7.4092 -0.8883 19 7 2.4293 -8.4667 0.0043 20 6 2.2385 -6.0255 0.0027 21 1 -0.4850 0.8401 -0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.9885 -4.8858 2.1399 24 1 -0.3455 -4.1152 1.2483 25 1 -1.0297 -6.3264 2.1380 26 1 -1.0274 -6.3274 0.3582 27 1 0.0483 -8.3758 1.2508 28 1 1.2185 -7.3732 2.1413 29 1 1.9490 -9.3540 0.0044 30 1 3.0652 -8.3997 -0.7763 31 1 2.8641 -5.9671 0.8933 32 1 2.8658 -5.9677 -0.8869 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070502911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:20 Heat of formation + Delta-G solvation = -66.909331 kcal Electronic energy + Delta-G solvation = -14346.681304 eV Core-core repulsion = 11919.633878 eV Total energy + Delta-G solvation = -2427.047426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.22092 -37.17454 -33.93009 -33.38277 -31.18755 -30.46182 -27.83072 -25.15287 -22.73881 -21.70889 -19.66618 -18.83174 -17.84146 -15.95747 -15.39647 -15.02451 -14.78572 -14.43341 -14.07850 -13.77424 -13.52798 -12.63769 -12.27188 -12.03544 -11.69274 -11.41738 -11.35649 -11.05430 -10.82609 -10.39635 -10.37502 -10.30521 -10.07428 -9.90983 -9.48368 -8.63241 -8.26710 -7.93565 -6.39367 -3.79925 3.19303 3.27696 3.33993 3.94343 4.18899 4.47457 4.81443 4.97899 5.20049 5.27871 5.41859 5.45433 5.59393 5.68779 5.71524 5.81822 5.90291 6.10500 6.23768 6.29646 6.43635 6.48481 6.57381 6.69756 6.83257 7.23293 7.48078 7.57487 8.09212 8.64335 9.20459 9.58611 10.10333 10.78404 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059742 B = 0.007108 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.567056 B = 3938.338765 C = 4286.950486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.446 3.554 11 O -0.596 6.596 12 C -0.095 4.095 13 H 0.078 0.922 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.089 3.911 18 H 0.031 0.969 19 N -0.848 5.848 20 C -0.085 4.085 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.335 0.665 30 H 0.341 0.659 31 H 0.075 0.925 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -11.929 0.353 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.232 3.768 11 O -0.481 6.481 12 C -0.118 4.118 13 H 0.096 0.904 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.022 4.022 18 H 0.049 0.951 19 N -0.377 5.377 20 C -0.123 4.123 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.009 -11.452 1.058 11.675 hybrid contribution -0.686 0.650 -0.998 1.374 sum -2.695 -10.802 0.060 11.133 Atomic orbital electron populations 1.69616 1.05926 1.28105 1.50702 1.25258 0.95624 0.99692 0.97360 0.85866 0.79257 0.80857 0.78365 1.20435 1.20927 1.19425 1.19732 0.93392 0.82408 1.47488 0.87989 1.41903 1.09202 1.04617 1.63980 1.19884 0.88122 0.84894 0.83945 1.90507 1.14057 1.87390 1.56156 1.21118 0.97219 0.94425 0.99012 0.90386 1.21546 0.98333 0.97212 0.97790 1.21524 0.97531 0.94613 1.01725 1.21543 0.97143 0.97689 0.98460 1.21406 0.92555 0.91562 0.96629 0.95074 1.58692 1.22409 1.04728 1.51907 1.21233 0.96904 0.90611 1.03548 0.91904 0.77396 0.91538 0.91240 0.91796 0.92123 0.92742 0.91152 0.85286 0.84651 0.90660 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.55 5.18 -10.97 -0.06 -14.61 16 10 C 0.45 10.83 7.11 -10.99 -0.08 10.76 16 11 O -0.60 -16.67 15.56 5.55 0.09 -16.58 16 12 C -0.10 -1.75 2.53 -91.77 -0.23 -1.98 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.11 -1.78 5.10 -26.73 -0.14 -1.92 16 15 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 16 C -0.11 -1.37 5.50 -26.73 -0.15 -1.51 16 17 C 0.09 1.19 3.25 -67.71 -0.22 0.97 16 18 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 19 N -0.85 -9.93 9.25 -4.67 -0.04 -9.97 16 20 C -0.08 -1.44 4.03 -26.73 -0.11 -1.55 16 21 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.39 9.73 7.31 -40.82 -0.30 9.43 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.07 1.15 7.56 -51.93 -0.39 0.75 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.34 3.16 9.04 -39.29 -0.36 2.80 16 30 H 0.34 3.70 8.99 -39.29 -0.35 3.35 16 31 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 264.08 15.07 3.98 3.98 Total: -1.00 -31.00 264.08 -6.36 -37.36 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.71 Total: 12.67 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.32 Total: -5.04 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.62 Total: -48.66 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.00 -6.36 -37.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.547 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds