Wall clock time and date at job start Mon Mar 30 2020 02:56:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31416 * 1
3 3 Si 1.86803 * 119.99892 * 2 1
4 4 H 1.48500 * 109.46755 * 269.99629 * 3 2 1
5 5 H 1.48498 * 109.47247 * 29.99683 * 3 2 1
6 6 H 1.48496 * 109.47178 * 149.99679 * 3 2 1
7 7 C 1.38949 * 119.99808 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99447 * 180.02562 * 7 2 1
9 9 N 1.37097 * 120.00089 * 0.02562 * 7 2 1
10 10 C 1.34777 * 119.99521 * 180.02562 * 9 7 2
11 11 O 1.21289 * 120.00709 * 359.97438 * 10 9 7
12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7
13 13 H 1.09000 * 109.47247 * 59.99885 * 12 10 9
14 14 C 1.52997 * 109.47265 * 299.99699 * 12 10 9
15 15 C 1.53002 * 109.47092 * 180.02562 * 14 12 10
16 16 C 1.52996 * 109.47343 * 60.00063 * 15 14 12
17 17 C 1.52997 * 109.46975 * 300.00008 * 16 15 14
18 18 H 1.09000 * 109.47140 * 299.99612 * 17 16 15
19 19 N 1.46906 * 109.46907 * 179.97438 * 17 16 15
20 20 C 1.52999 * 109.47269 * 60.00159 * 17 16 15
21 21 H 0.97002 * 120.00022 * 0.02562 * 1 2 3
22 22 H 0.96996 * 120.00210 * 359.97438 * 9 7 2
23 23 H 1.09000 * 109.47140 * 300.00252 * 14 12 10
24 24 H 1.09002 * 109.47045 * 60.00159 * 14 12 10
25 25 H 1.09004 * 109.46930 * 180.02562 * 15 14 12
26 26 H 1.09004 * 109.47059 * 299.99666 * 15 14 12
27 27 H 1.09001 * 109.47372 * 179.97438 * 16 15 14
28 28 H 1.09000 * 109.46870 * 59.99786 * 16 15 14
29 29 H 1.00896 * 111.00309 * 59.99727 * 19 17 16
30 30 H 1.00902 * 110.99923 * 183.95891 * 19 17 16
31 31 H 1.09000 * 109.47486 * 59.99665 * 20 17 16
32 32 H 1.09001 * 109.47362 * 180.02562 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4957 2.0463 -1.4001
5 1 1.4456 2.6527 0.7000
6 1 3.5456 1.4403 0.7001
7 6 2.0089 -1.2034 0.0005
8 1 3.0888 -1.2033 0.0010
9 7 1.3234 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2102 -3.5579 0.0021
12 6 1.2438 -4.8629 0.0010
13 1 0.6182 -4.9208 -0.8897
14 6 0.3628 -4.9437 1.2492
15 6 -0.4017 -6.2690 1.2489
16 6 0.5929 -7.4316 1.2506
17 6 1.4739 -7.3508 0.0024
18 1 0.8483 -7.4092 -0.8883
19 7 2.4293 -8.4667 0.0043
20 6 2.2385 -6.0255 0.0027
21 1 -0.4850 0.8401 -0.0004
22 1 0.3534 -2.3907 0.0005
23 1 0.9885 -4.8858 2.1399
24 1 -0.3455 -4.1152 1.2483
25 1 -1.0297 -6.3264 2.1380
26 1 -1.0274 -6.3274 0.3582
27 1 0.0483 -8.3758 1.2508
28 1 1.2185 -7.3732 2.1413
29 1 1.9490 -9.3540 0.0044
30 1 3.0652 -8.3997 -0.7763
31 1 2.8641 -5.9671 0.8933
32 1 2.8658 -5.9677 -0.8869
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070502911.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:20
Heat of formation + Delta-G solvation = -66.909331 kcal
Electronic energy + Delta-G solvation = -14346.681304 eV
Core-core repulsion = 11919.633878 eV
Total energy + Delta-G solvation = -2427.047426 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.22092 -37.17454 -33.93009 -33.38277 -31.18755 -30.46182 -27.83072 -25.15287
-22.73881 -21.70889 -19.66618 -18.83174 -17.84146 -15.95747 -15.39647 -15.02451
-14.78572 -14.43341 -14.07850 -13.77424 -13.52798 -12.63769 -12.27188 -12.03544
-11.69274 -11.41738 -11.35649 -11.05430 -10.82609 -10.39635 -10.37502 -10.30521
-10.07428 -9.90983 -9.48368 -8.63241 -8.26710 -7.93565 -6.39367 -3.79925
3.19303 3.27696 3.33993 3.94343 4.18899 4.47457 4.81443 4.97899
5.20049 5.27871 5.41859 5.45433 5.59393 5.68779 5.71524 5.81822
5.90291 6.10500 6.23768 6.29646 6.43635 6.48481 6.57381 6.69756
6.83257 7.23293 7.48078 7.57487 8.09212 8.64335 9.20459 9.58611
10.10333 10.78404
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.059742 B = 0.007108 C = 0.006530
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 468.567056 B = 3938.338765 C = 4286.950486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.022 3.978
3 Si 0.929 3.071
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.270 1.270
7 C -0.301 4.301
8 H 0.102 0.898
9 N -0.562 5.562
10 C 0.446 3.554
11 O -0.596 6.596
12 C -0.095 4.095
13 H 0.078 0.922
14 C -0.111 4.111
15 C -0.116 4.116
16 C -0.110 4.110
17 C 0.089 3.911
18 H 0.031 0.969
19 N -0.848 5.848
20 C -0.085 4.085
21 H 0.271 0.729
22 H 0.392 0.608
23 H 0.066 0.934
24 H 0.069 0.931
25 H 0.063 0.937
26 H 0.060 0.940
27 H 0.054 0.946
28 H 0.070 0.930
29 H 0.335 0.665
30 H 0.341 0.659
31 H 0.075 0.925
32 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.930 -11.929 0.353 12.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.179 4.179
3 Si 0.757 3.243
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.430 4.430
8 H 0.120 0.880
9 N -0.197 5.197
10 C 0.232 3.768
11 O -0.481 6.481
12 C -0.118 4.118
13 H 0.096 0.904
14 C -0.149 4.149
15 C -0.154 4.154
16 C -0.148 4.148
17 C -0.022 4.022
18 H 0.049 0.951
19 N -0.377 5.377
20 C -0.123 4.123
21 H 0.081 0.919
22 H 0.226 0.774
23 H 0.085 0.915
24 H 0.088 0.912
25 H 0.082 0.918
26 H 0.079 0.921
27 H 0.073 0.927
28 H 0.088 0.912
29 H 0.147 0.853
30 H 0.153 0.847
31 H 0.093 0.907
32 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -2.009 -11.452 1.058 11.675
hybrid contribution -0.686 0.650 -0.998 1.374
sum -2.695 -10.802 0.060 11.133
Atomic orbital electron populations
1.69616 1.05926 1.28105 1.50702 1.25258 0.95624 0.99692 0.97360
0.85866 0.79257 0.80857 0.78365 1.20435 1.20927 1.19425 1.19732
0.93392 0.82408 1.47488 0.87989 1.41903 1.09202 1.04617 1.63980
1.19884 0.88122 0.84894 0.83945 1.90507 1.14057 1.87390 1.56156
1.21118 0.97219 0.94425 0.99012 0.90386 1.21546 0.98333 0.97212
0.97790 1.21524 0.97531 0.94613 1.01725 1.21543 0.97143 0.97689
0.98460 1.21406 0.92555 0.91562 0.96629 0.95074 1.58692 1.22409
1.04728 1.51907 1.21233 0.96904 0.90611 1.03548 0.91904 0.77396
0.91538 0.91240 0.91796 0.92123 0.92742 0.91152 0.85286 0.84651
0.90660 0.91903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16
2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16
4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16
5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16
8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16
9 N -0.56 -14.55 5.18 -10.97 -0.06 -14.61 16
10 C 0.45 10.83 7.11 -10.99 -0.08 10.76 16
11 O -0.60 -16.67 15.56 5.55 0.09 -16.58 16
12 C -0.10 -1.75 2.53 -91.77 -0.23 -1.98 16
13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
14 C -0.11 -1.78 5.10 -26.73 -0.14 -1.92 16
15 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16
16 C -0.11 -1.37 5.50 -26.73 -0.15 -1.51 16
17 C 0.09 1.19 3.25 -67.71 -0.22 0.97 16
18 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16
19 N -0.85 -9.93 9.25 -4.67 -0.04 -9.97 16
20 C -0.08 -1.44 4.03 -26.73 -0.11 -1.55 16
21 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
22 H 0.39 9.73 7.31 -40.82 -0.30 9.43 16
23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
24 H 0.07 1.15 7.56 -51.93 -0.39 0.75 16
25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.34 3.16 9.04 -39.29 -0.36 2.80 16
30 H 0.34 3.70 8.99 -39.29 -0.35 3.35 16
31 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16
32 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16
LS Contribution 264.08 15.07 3.98 3.98
Total: -1.00 -31.00 264.08 -6.36 -37.36
By element:
Atomic # 1 Polarization: 17.38 SS G_CDS: -4.71 Total: 12.67 kcal
Atomic # 6 Polarization: -3.72 SS G_CDS: -1.32 Total: -5.04 kcal
Atomic # 7 Polarization: -49.28 SS G_CDS: 0.62 Total: -48.66 kcal
Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.58 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -31.00 -6.36 -37.36 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070502911.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.547 kcal
(2) G-P(sol) polarization free energy of solvation -30.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.909 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds