Wall clock time and date at job start Mon Mar 30 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99892 * 2 1 4 4 H 1.48500 * 109.46755 * 269.99629 * 3 2 1 5 5 H 1.48498 * 109.47247 * 29.99683 * 3 2 1 6 6 H 1.48496 * 109.47178 * 149.99679 * 3 2 1 7 7 C 1.38949 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99447 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99521 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00709 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47247 * 59.99885 * 12 10 9 14 14 C 1.52997 * 109.47265 * 299.99699 * 12 10 9 15 15 C 1.53002 * 109.47092 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47343 * 60.00063 * 15 14 12 17 17 C 1.52997 * 109.46975 * 300.00008 * 16 15 14 18 18 H 1.09000 * 109.47140 * 299.99612 * 17 16 15 19 19 N 1.46906 * 109.46907 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47269 * 60.00159 * 17 16 15 21 21 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00210 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.47140 * 300.00252 * 14 12 10 24 24 H 1.09002 * 109.47045 * 60.00159 * 14 12 10 25 25 H 1.09004 * 109.46930 * 180.02562 * 15 14 12 26 26 H 1.09004 * 109.47059 * 299.99666 * 15 14 12 27 27 H 1.09001 * 109.47372 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.46870 * 59.99786 * 16 15 14 29 29 H 1.00896 * 111.00309 * 59.99727 * 19 17 16 30 30 H 1.00902 * 110.99923 * 183.95891 * 19 17 16 31 31 H 1.09000 * 109.47486 * 59.99665 * 20 17 16 32 32 H 1.09001 * 109.47362 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 1 0.6182 -4.9208 -0.8897 14 6 0.3628 -4.9437 1.2492 15 6 -0.4017 -6.2690 1.2489 16 6 0.5929 -7.4316 1.2506 17 6 1.4739 -7.3508 0.0024 18 1 0.8483 -7.4092 -0.8883 19 7 2.4293 -8.4667 0.0043 20 6 2.2385 -6.0255 0.0027 21 1 -0.4850 0.8401 -0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.9885 -4.8858 2.1399 24 1 -0.3455 -4.1152 1.2483 25 1 -1.0297 -6.3264 2.1380 26 1 -1.0274 -6.3274 0.3582 27 1 0.0483 -8.3758 1.2508 28 1 1.2185 -7.3732 2.1413 29 1 1.9490 -9.3540 0.0044 30 1 3.0652 -8.3997 -0.7763 31 1 2.8641 -5.9671 0.8933 32 1 2.8658 -5.9677 -0.8869 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070502911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:20 Heat of formation + Delta-G solvation = -90.214974 kcal Electronic energy + Delta-G solvation = -14347.691913 eV Core-core repulsion = 11919.633878 eV Total energy + Delta-G solvation = -2428.058035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84025 -38.73859 -36.02303 -34.56338 -33.20033 -31.81695 -29.01132 -27.12283 -24.27435 -22.88224 -21.03591 -20.51254 -19.88735 -17.72530 -16.80192 -16.40634 -16.08889 -15.92640 -15.74503 -15.38947 -14.93657 -14.38952 -13.81295 -13.49149 -13.26453 -12.96476 -12.79834 -12.54678 -12.45104 -12.13499 -12.10137 -11.57755 -11.54163 -11.43148 -11.16624 -10.24495 -10.03848 -9.55826 -8.48995 -5.98340 1.36320 1.40072 1.53252 2.02042 2.28581 3.12365 3.18001 3.52558 3.82413 3.92501 4.11622 4.25837 4.32672 4.44285 4.53105 4.55668 4.68772 4.71787 5.07395 5.13927 5.24522 5.27391 5.28895 5.36792 5.39232 5.53461 5.97753 6.29615 6.56528 6.68507 7.09370 7.53324 8.08877 8.68368 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059742 B = 0.007108 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.567056 B = 3938.338765 C = 4286.950486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.568 5.568 10 C 0.438 3.562 11 O -0.639 6.639 12 C -0.086 4.086 13 H 0.098 0.902 14 C -0.107 4.107 15 C -0.107 4.107 16 C -0.108 4.108 17 C 0.098 3.902 18 H 0.047 0.953 19 N -0.854 5.854 20 C -0.079 4.079 21 H 0.279 0.721 22 H 0.397 0.603 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.352 0.648 30 H 0.345 0.655 31 H 0.046 0.954 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -12.773 0.251 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.203 5.203 10 C 0.226 3.774 11 O -0.527 6.527 12 C -0.108 4.108 13 H 0.116 0.884 14 C -0.145 4.145 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.013 4.013 18 H 0.065 0.935 19 N -0.386 5.386 20 C -0.117 4.117 21 H 0.088 0.912 22 H 0.231 0.769 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.065 0.935 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.453 -12.320 0.954 12.830 hybrid contribution -0.224 0.903 -0.968 1.342 sum -3.676 -11.418 -0.013 11.995 Atomic orbital electron populations 1.69672 1.06822 1.29411 1.50003 1.26059 0.96575 1.02414 0.96050 0.84919 0.77857 0.76761 0.78735 1.19495 1.19282 1.19897 1.19703 0.92707 0.84237 1.50292 0.90526 1.41956 1.09307 1.04674 1.64401 1.21017 0.88006 0.86461 0.81888 1.90469 1.16290 1.88305 1.57656 1.21110 0.97394 0.91140 1.01144 0.88352 1.21523 0.97789 0.99599 0.95628 1.21496 0.97385 0.92093 1.03549 1.21538 0.96886 0.98932 0.97186 1.21272 0.92425 0.89713 0.97933 0.93512 1.58612 1.22458 1.05149 1.52380 1.21162 0.96537 0.92647 1.01396 0.91166 0.76901 0.93241 0.91862 0.89838 0.90423 0.89785 0.92516 0.83356 0.84173 0.93474 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.57 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.34 -19.89 9.68 84.04 0.81 -19.08 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -30.24 5.18 -306.99 -1.59 -31.83 16 10 C 0.44 22.00 7.11 87.66 0.62 22.62 16 11 O -0.64 -37.42 15.56 -3.06 -0.05 -37.47 16 12 C -0.09 -3.13 2.53 -11.54 -0.03 -3.16 16 13 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 14 C -0.11 -3.36 5.10 30.59 0.16 -3.21 16 15 C -0.11 -2.39 5.92 30.59 0.18 -2.20 16 16 C -0.11 -2.33 5.50 30.59 0.17 -2.16 16 17 C 0.10 2.37 3.25 44.91 0.15 2.51 16 18 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 19 N -0.85 -18.17 9.25 -168.67 -1.56 -19.73 16 20 C -0.08 -2.68 4.03 30.60 0.12 -2.55 16 21 H 0.28 14.17 8.31 -92.71 -0.77 13.39 16 22 H 0.40 20.02 7.31 -92.71 -0.68 19.35 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.05 7.56 -2.39 -0.02 2.03 16 25 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.35 5.54 9.04 -89.70 -0.81 4.73 16 30 H 0.35 6.94 8.99 -89.69 -0.81 6.14 16 31 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -68.11 264.08 0.60 -67.50 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.16 Total: 33.17 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 2.65 Total: -7.37 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -2.87 Total: -101.41 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.05 Total: -37.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.11 0.60 -67.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.711 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds