Wall clock time and date at job start Mon Mar 30 2020 02:56:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31416 * 1
3 3 Si 1.86803 * 119.99892 * 2 1
4 4 H 1.48500 * 109.46755 * 269.99629 * 3 2 1
5 5 H 1.48498 * 109.47247 * 29.99683 * 3 2 1
6 6 H 1.48496 * 109.47178 * 149.99679 * 3 2 1
7 7 C 1.38949 * 119.99808 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99447 * 180.02562 * 7 2 1
9 9 N 1.37097 * 120.00089 * 0.02562 * 7 2 1
10 10 C 1.34777 * 119.99521 * 180.02562 * 9 7 2
11 11 O 1.21289 * 120.00709 * 359.97438 * 10 9 7
12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7
13 13 H 1.09000 * 109.47247 * 59.99885 * 12 10 9
14 14 C 1.52997 * 109.47265 * 299.99699 * 12 10 9
15 15 C 1.53002 * 109.47092 * 180.02562 * 14 12 10
16 16 C 1.52996 * 109.47343 * 60.00063 * 15 14 12
17 17 C 1.52997 * 109.46975 * 300.00008 * 16 15 14
18 18 H 1.09000 * 109.47140 * 299.99612 * 17 16 15
19 19 N 1.46906 * 109.46907 * 179.97438 * 17 16 15
20 20 C 1.52999 * 109.47269 * 60.00159 * 17 16 15
21 21 H 0.97002 * 120.00022 * 0.02562 * 1 2 3
22 22 H 0.96996 * 120.00210 * 359.97438 * 9 7 2
23 23 H 1.09000 * 109.47140 * 300.00252 * 14 12 10
24 24 H 1.09002 * 109.47045 * 60.00159 * 14 12 10
25 25 H 1.09004 * 109.46930 * 180.02562 * 15 14 12
26 26 H 1.09004 * 109.47059 * 299.99666 * 15 14 12
27 27 H 1.09001 * 109.47372 * 179.97438 * 16 15 14
28 28 H 1.09000 * 109.46870 * 59.99786 * 16 15 14
29 29 H 1.00896 * 111.00309 * 59.99727 * 19 17 16
30 30 H 1.00902 * 110.99923 * 183.95891 * 19 17 16
31 31 H 1.09000 * 109.47486 * 59.99665 * 20 17 16
32 32 H 1.09001 * 109.47362 * 180.02562 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4957 2.0463 -1.4001
5 1 1.4456 2.6527 0.7000
6 1 3.5456 1.4403 0.7001
7 6 2.0089 -1.2034 0.0005
8 1 3.0888 -1.2033 0.0010
9 7 1.3234 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2102 -3.5579 0.0021
12 6 1.2438 -4.8629 0.0010
13 1 0.6182 -4.9208 -0.8897
14 6 0.3628 -4.9437 1.2492
15 6 -0.4017 -6.2690 1.2489
16 6 0.5929 -7.4316 1.2506
17 6 1.4739 -7.3508 0.0024
18 1 0.8483 -7.4092 -0.8883
19 7 2.4293 -8.4667 0.0043
20 6 2.2385 -6.0255 0.0027
21 1 -0.4850 0.8401 -0.0004
22 1 0.3534 -2.3907 0.0005
23 1 0.9885 -4.8858 2.1399
24 1 -0.3455 -4.1152 1.2483
25 1 -1.0297 -6.3264 2.1380
26 1 -1.0274 -6.3274 0.3582
27 1 0.0483 -8.3758 1.2508
28 1 1.2185 -7.3732 2.1413
29 1 1.9490 -9.3540 0.0044
30 1 3.0652 -8.3997 -0.7763
31 1 2.8641 -5.9671 0.8933
32 1 2.8658 -5.9677 -0.8869
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070502911.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:20
Heat of formation + Delta-G solvation = -90.214974 kcal
Electronic energy + Delta-G solvation = -14347.691913 eV
Core-core repulsion = 11919.633878 eV
Total energy + Delta-G solvation = -2428.058035 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.84025 -38.73859 -36.02303 -34.56338 -33.20033 -31.81695 -29.01132 -27.12283
-24.27435 -22.88224 -21.03591 -20.51254 -19.88735 -17.72530 -16.80192 -16.40634
-16.08889 -15.92640 -15.74503 -15.38947 -14.93657 -14.38952 -13.81295 -13.49149
-13.26453 -12.96476 -12.79834 -12.54678 -12.45104 -12.13499 -12.10137 -11.57755
-11.54163 -11.43148 -11.16624 -10.24495 -10.03848 -9.55826 -8.48995 -5.98340
1.36320 1.40072 1.53252 2.02042 2.28581 3.12365 3.18001 3.52558
3.82413 3.92501 4.11622 4.25837 4.32672 4.44285 4.53105 4.55668
4.68772 4.71787 5.07395 5.13927 5.24522 5.27391 5.28895 5.36792
5.39232 5.53461 5.97753 6.29615 6.56528 6.68507 7.09370 7.53324
8.08877 8.68368
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.059742 B = 0.007108 C = 0.006530
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 468.567056 B = 3938.338765 C = 4286.950486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.011 4.011
3 Si 0.994 3.006
4 H -0.270 1.270
5 H -0.268 1.268
6 H -0.274 1.274
7 C -0.340 4.340
8 H 0.077 0.923
9 N -0.568 5.568
10 C 0.438 3.562
11 O -0.639 6.639
12 C -0.086 4.086
13 H 0.098 0.902
14 C -0.107 4.107
15 C -0.107 4.107
16 C -0.108 4.108
17 C 0.098 3.902
18 H 0.047 0.953
19 N -0.854 5.854
20 C -0.079 4.079
21 H 0.279 0.721
22 H 0.397 0.603
23 H 0.049 0.951
24 H 0.063 0.937
25 H 0.083 0.917
26 H 0.077 0.923
27 H 0.084 0.916
28 H 0.056 0.944
29 H 0.352 0.648
30 H 0.345 0.655
31 H 0.046 0.954
32 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.338 -12.773 0.251 13.492
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.211 4.211
3 Si 0.817 3.183
4 H -0.195 1.195
5 H -0.193 1.193
6 H -0.199 1.199
7 C -0.469 4.469
8 H 0.095 0.905
9 N -0.203 5.203
10 C 0.226 3.774
11 O -0.527 6.527
12 C -0.108 4.108
13 H 0.116 0.884
14 C -0.145 4.145
15 C -0.145 4.145
16 C -0.145 4.145
17 C -0.013 4.013
18 H 0.065 0.935
19 N -0.386 5.386
20 C -0.117 4.117
21 H 0.088 0.912
22 H 0.231 0.769
23 H 0.068 0.932
24 H 0.081 0.919
25 H 0.102 0.898
26 H 0.096 0.904
27 H 0.102 0.898
28 H 0.075 0.925
29 H 0.166 0.834
30 H 0.158 0.842
31 H 0.065 0.935
32 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -3.453 -12.320 0.954 12.830
hybrid contribution -0.224 0.903 -0.968 1.342
sum -3.676 -11.418 -0.013 11.995
Atomic orbital electron populations
1.69672 1.06822 1.29411 1.50003 1.26059 0.96575 1.02414 0.96050
0.84919 0.77857 0.76761 0.78735 1.19495 1.19282 1.19897 1.19703
0.92707 0.84237 1.50292 0.90526 1.41956 1.09307 1.04674 1.64401
1.21017 0.88006 0.86461 0.81888 1.90469 1.16290 1.88305 1.57656
1.21110 0.97394 0.91140 1.01144 0.88352 1.21523 0.97789 0.99599
0.95628 1.21496 0.97385 0.92093 1.03549 1.21538 0.96886 0.98932
0.97186 1.21272 0.92425 0.89713 0.97933 0.93512 1.58612 1.22458
1.05149 1.52380 1.21162 0.96537 0.92647 1.01396 0.91166 0.76901
0.93241 0.91862 0.89838 0.90423 0.89785 0.92516 0.83356 0.84173
0.93474 0.93482
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16
2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16
3 Si 0.99 43.55 29.55 68.60 2.03 45.57 16
4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16
6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
7 C -0.34 -19.89 9.68 84.04 0.81 -19.08 16
8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16
9 N -0.57 -30.24 5.18 -306.99 -1.59 -31.83 16
10 C 0.44 22.00 7.11 87.66 0.62 22.62 16
11 O -0.64 -37.42 15.56 -3.06 -0.05 -37.47 16
12 C -0.09 -3.13 2.53 -11.54 -0.03 -3.16 16
13 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16
14 C -0.11 -3.36 5.10 30.59 0.16 -3.21 16
15 C -0.11 -2.39 5.92 30.59 0.18 -2.20 16
16 C -0.11 -2.33 5.50 30.59 0.17 -2.16 16
17 C 0.10 2.37 3.25 44.91 0.15 2.51 16
18 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
19 N -0.85 -18.17 9.25 -168.67 -1.56 -19.73 16
20 C -0.08 -2.68 4.03 30.60 0.12 -2.55 16
21 H 0.28 14.17 8.31 -92.71 -0.77 13.39 16
22 H 0.40 20.02 7.31 -92.71 -0.68 19.35 16
23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
24 H 0.06 2.05 7.56 -2.39 -0.02 2.03 16
25 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16
26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
29 H 0.35 5.54 9.04 -89.70 -0.81 4.73 16
30 H 0.35 6.94 8.99 -89.69 -0.81 6.14 16
31 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16
32 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16
Total: -1.00 -68.11 264.08 0.60 -67.50
By element:
Atomic # 1 Polarization: 34.33 SS G_CDS: -1.16 Total: 33.17 kcal
Atomic # 6 Polarization: -10.02 SS G_CDS: 2.65 Total: -7.37 kcal
Atomic # 7 Polarization: -98.55 SS G_CDS: -2.87 Total: -101.41 kcal
Atomic # 8 Polarization: -37.42 SS G_CDS: -0.05 Total: -37.47 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal
Total: -68.11 0.60 -67.50 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070502911.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.711 kcal
(2) G-P(sol) polarization free energy of solvation -68.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds