Wall clock time and date at job start Mon Mar 30 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.21716 * 65.47850 * 13 12 11 15 15 C 1.54482 * 110.24391 * 187.49850 * 13 12 11 16 16 C 1.54625 * 101.76140 * 144.41711 * 15 13 12 17 17 C 1.51282 * 104.19985 * 335.20137 * 16 15 13 18 18 O 1.21281 * 124.94329 * 196.27586 * 17 16 15 19 19 N 1.34419 * 110.11163 * 16.25151 * 17 16 15 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.00899 * 110.99910 * 303.95546 * 11 10 9 26 26 H 1.08991 * 109.47315 * 299.99753 * 12 11 10 27 27 H 1.08999 * 109.47003 * 60.00043 * 12 11 10 28 28 H 1.08997 * 110.96572 * 262.53692 * 15 13 12 29 29 H 1.08999 * 110.96749 * 26.30238 * 15 13 12 30 30 H 1.09010 * 110.48738 * 216.52028 * 16 15 13 31 31 H 1.09006 * 110.59991 * 93.93637 * 16 15 13 32 32 H 0.97001 * 124.34388 * 180.42596 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 0.0005 14 1 1.0768 -7.4793 -0.9303 15 6 2.5805 -8.5870 0.1903 16 6 1.7111 -9.5367 1.0464 17 6 0.7389 -8.6161 1.7505 18 8 0.0731 -8.9178 2.7183 19 7 0.7207 -7.4148 1.1477 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8906 25 1 0.8742 -4.9845 0.7810 26 1 3.0639 -6.0348 -0.8890 27 1 3.0627 -6.0349 0.8910 28 1 2.8283 -9.0429 -0.7683 29 1 3.4833 -8.2949 0.7266 30 1 2.3273 -10.0679 1.7720 31 1 1.1760 -10.2433 0.4119 32 1 0.1735 -6.6669 1.4344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070628353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:07 Heat of formation + Delta-G solvation = -55.158161 kcal Electronic energy + Delta-G solvation = -13690.808072 eV Core-core repulsion = 11264.270215 eV Total energy + Delta-G solvation = -2426.537857 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.45328 -37.24631 -35.50850 -33.23293 -31.46802 -30.23061 -27.64707 -24.29601 -22.91491 -21.57265 -20.92721 -20.39621 -17.35993 -16.99219 -16.65827 -15.29966 -15.05086 -14.39781 -13.93356 -13.76933 -13.69518 -13.43767 -12.82758 -12.60992 -12.31007 -12.12663 -11.58001 -11.31367 -11.06068 -10.88034 -10.25459 -10.15092 -9.98392 -9.81625 -9.21543 -8.62295 -8.35843 -8.10638 -6.38891 -4.08472 2.49390 3.25163 3.42379 3.44346 3.63261 4.06781 4.25775 4.37579 4.53794 4.74705 4.96008 5.05098 5.22607 5.38947 5.39648 5.45647 5.61296 5.71060 5.89291 6.10030 6.18040 6.68848 6.73118 6.92984 7.12207 7.39893 7.54268 7.66585 8.14502 8.18698 8.42775 8.85365 9.64256 11.02193 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065774 B = 0.004923 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.598898 B = 5686.180208 C = 5936.905956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.048 0.952 9 C 0.011 3.989 10 C 0.073 3.927 11 N -0.692 5.692 12 C 0.049 3.951 13 C 0.131 3.869 14 H 0.091 0.909 15 C -0.129 4.129 16 C -0.155 4.155 17 C 0.517 3.483 18 O -0.542 6.542 19 N -0.724 5.724 20 H 0.269 0.731 21 H 0.004 0.996 22 H 0.017 0.983 23 H 0.063 0.937 24 H 0.019 0.981 25 H 0.331 0.669 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -16.534 -1.179 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.644 4.644 8 H 0.066 0.934 9 C -0.026 4.026 10 C -0.055 4.055 11 N -0.323 5.323 12 C -0.082 4.082 13 C 0.026 3.974 14 H 0.109 0.891 15 C -0.167 4.167 16 C -0.196 4.196 17 C 0.303 3.697 18 O -0.419 6.419 19 N -0.380 5.380 20 H 0.080 0.920 21 H 0.022 0.978 22 H 0.035 0.965 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.148 0.852 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.486 -15.138 -1.401 16.162 hybrid contribution 0.371 -1.259 0.957 1.624 sum 5.857 -16.397 -0.444 17.417 Atomic orbital electron populations 1.70778 1.06882 1.30690 1.46333 1.25852 0.96540 1.02724 0.93697 0.83533 0.74879 0.75310 0.76483 1.20711 1.21493 1.21409 1.21974 0.94223 0.91961 1.56226 0.93389 1.19210 0.94667 0.92267 0.96457 1.22033 0.96712 0.87686 0.99102 1.60667 1.19909 1.02459 1.49307 1.22315 0.94687 0.89803 1.01368 1.21843 0.90619 0.95315 0.89624 0.89119 1.22690 0.98058 0.94572 1.01386 1.22336 0.98186 0.98458 1.00590 1.20916 0.82555 0.83477 0.82779 1.90753 1.46191 1.78254 1.26739 1.46412 1.45067 1.14918 1.31604 0.92019 0.97766 0.96466 0.91871 0.96292 0.85151 0.89692 0.94988 0.88907 0.89790 0.88152 0.87796 0.74908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.25 29.90 -169.99 -5.08 20.16 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.61 -17.25 9.11 -34.44 -0.31 -17.56 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C 0.01 0.29 4.54 -27.88 -0.13 0.16 16 10 C 0.07 1.48 5.62 -3.83 -0.02 1.45 16 11 N -0.69 -11.26 6.50 -113.78 -0.74 -12.00 16 12 C 0.05 0.59 5.41 -3.82 -0.02 0.57 16 13 C 0.13 1.30 3.82 -67.01 -0.26 1.04 16 14 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 15 C -0.13 -0.92 6.69 -25.10 -0.17 -1.08 16 16 C -0.16 -1.28 6.86 -26.74 -0.18 -1.47 16 17 C 0.52 6.60 8.43 -10.86 -0.09 6.51 16 18 O -0.54 -9.29 18.03 5.56 0.10 -9.19 16 19 N -0.72 -8.50 5.73 -52.76 -0.30 -8.80 16 20 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 21 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 22 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.33 5.25 7.10 -39.29 -0.28 4.97 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.03 0.40 8.03 -51.93 -0.42 -0.02 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 30 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 5.06 7.50 -40.82 -0.31 4.75 16 LS Contribution 269.51 15.07 4.06 4.06 Total: -1.00 -33.28 269.51 -7.18 -40.47 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.70 Total: 2.61 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.28 Total: -10.00 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.28 Total: -48.11 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.10 Total: -9.19 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.28 -7.18 -40.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.693 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds