Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.62472 * 2 1 4 4 C 1.50701 * 109.47013 * 59.99896 * 3 2 1 5 5 H 1.07998 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00189 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99940 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47059 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47241 * 120.00353 * 8 6 4 11 11 H 1.48502 * 109.47056 * 240.00371 * 8 6 4 12 12 C 1.51275 * 109.62823 * 120.57224 * 2 1 3 13 13 O 1.20762 * 120.85097 * 248.34832 * 12 2 1 14 14 C 1.51271 * 118.29510 * 68.36341 * 12 2 1 15 15 C 1.53232 * 108.53333 * 51.35660 * 14 12 2 16 16 C 1.52955 * 109.40365 * 305.36427 * 15 14 12 17 17 C 1.52956 * 109.81754 * 63.60116 * 16 15 14 18 18 H 1.09003 * 109.48242 * 56.37990 * 17 16 15 19 19 O 1.42901 * 109.48478 * 176.42137 * 17 16 15 20 20 H 1.09002 * 109.47153 * 180.37943 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.38134 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.38115 * 1 2 3 23 23 H 1.08998 * 109.47446 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47114 * 300.00162 * 3 2 1 25 25 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.63287 * 291.63426 * 14 12 2 27 27 H 1.09008 * 109.62003 * 171.06133 * 14 12 2 28 28 H 1.09001 * 109.48138 * 185.38898 * 15 14 12 29 29 H 1.08996 * 109.49771 * 65.35168 * 15 14 12 30 30 H 1.09005 * 109.41605 * 303.49729 * 16 15 14 31 31 H 1.08997 * 109.36151 * 183.67223 * 16 15 14 32 32 H 0.96703 * 114.00109 * 299.93130 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0438 1.4412 0.0000 4 6 1.5434 2.1529 1.2305 5 1 0.9207 1.6298 1.9411 6 6 1.8804 3.4719 1.4489 7 7 2.6382 4.1090 0.5833 8 14 1.2595 4.3544 2.9738 9 1 0.4316 3.4233 3.7818 10 1 2.4154 4.8175 3.7828 11 1 0.4383 5.5236 2.5691 12 6 2.0381 -0.7247 1.2268 13 8 2.6065 -0.1264 2.1085 14 6 1.8164 -2.2181 1.3206 15 6 2.3208 -2.8676 0.0276 16 6 1.6430 -2.2040 -1.1723 17 6 2.0447 -0.7299 -1.2450 18 1 3.1309 -0.6509 -1.2897 19 8 1.4750 -0.1378 -2.4142 20 1 -0.3633 -1.0277 0.0068 21 1 -0.3633 0.5079 -0.8934 22 1 -0.3634 0.5198 0.8866 23 1 3.1338 1.4383 0.0005 24 1 1.6819 1.9560 -0.8900 25 1 2.8750 5.0370 0.7368 26 1 0.7530 -2.4235 1.4428 27 1 2.3694 -2.6176 2.1708 28 1 2.0820 -3.9310 0.0378 29 1 3.4005 -2.7382 -0.0473 30 1 0.5609 -2.2798 -1.0649 31 1 1.9524 -2.7093 -2.0872 32 1 1.7576 -0.5507 -3.2418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075575690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -130.273933 kcal Electronic energy + Delta-G solvation = -15041.809961 eV Core-core repulsion = 12579.722088 eV Total energy + Delta-G solvation = -2462.087873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.39687 -38.54574 -35.71822 -35.56584 -33.59692 -29.65810 -28.99639 -27.02944 -24.92334 -22.82279 -22.04317 -19.07897 -18.52543 -18.11510 -16.88632 -16.51859 -15.98105 -15.65147 -15.31736 -14.96064 -14.29515 -14.20786 -14.11833 -13.37597 -13.19696 -13.01573 -12.87433 -12.76760 -12.57168 -12.29877 -11.91420 -11.82229 -11.55373 -11.44195 -10.87718 -10.62072 -10.56129 -9.96845 -8.15814 -6.19658 1.21962 1.32278 1.34692 1.46694 2.40826 3.13741 3.19342 3.56532 3.85171 3.90580 4.05474 4.17895 4.33372 4.40659 4.59633 4.67025 4.73757 4.95793 5.02057 5.07366 5.12237 5.24243 5.34291 5.38885 5.45393 5.50480 5.72731 5.84443 6.26071 6.83372 6.88744 7.07715 7.43652 8.97399 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.040055 B = 0.010803 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.865632 B = 2591.229941 C = 2947.570363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C 0.053 3.947 4 C -0.494 4.494 5 H 0.051 0.949 6 C -0.011 4.011 7 N -0.940 5.940 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.357 3.643 13 O -0.477 6.477 14 C -0.164 4.164 15 C -0.104 4.104 16 C -0.146 4.146 17 C 0.121 3.879 18 H 0.036 0.964 19 O -0.573 6.573 20 H 0.085 0.915 21 H 0.056 0.944 22 H 0.038 0.962 23 H -0.029 1.029 24 H -0.002 1.002 25 H 0.259 0.741 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -16.925 -4.087 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.106 4.106 3 C 0.016 3.984 4 C -0.532 4.532 5 H 0.069 0.931 6 C -0.206 4.206 7 N -0.583 5.583 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.232 3.768 13 O -0.350 6.350 14 C -0.201 4.201 15 C -0.141 4.141 16 C -0.183 4.183 17 C 0.062 3.938 18 H 0.054 0.946 19 O -0.381 6.381 20 H 0.104 0.896 21 H 0.075 0.925 22 H 0.058 0.942 23 H -0.011 1.011 24 H 0.016 0.984 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.597 -16.072 -3.199 16.777 hybrid contribution 0.447 0.998 0.292 1.131 sum -3.150 -15.074 -2.907 15.672 Atomic orbital electron populations 1.21505 0.91322 1.02079 1.01645 1.21408 0.98871 0.96465 0.93863 1.18778 0.93108 0.90931 0.95566 1.21428 1.29414 0.95906 1.06472 0.93093 1.25887 0.96070 0.98869 0.99783 1.70111 1.39169 1.11158 1.37818 0.85521 0.78141 0.78517 0.79639 1.19097 1.20893 1.19902 1.25369 0.73611 0.92328 0.85469 1.90415 1.32545 1.71843 1.40206 1.22416 1.05412 0.90805 1.01478 1.21460 1.00175 1.01312 0.91193 1.22315 1.02880 0.92863 1.00249 1.21709 0.94947 0.92614 0.84512 0.94640 1.86587 1.72706 1.62262 1.16519 0.89593 0.92528 0.94249 1.01081 0.98386 0.93219 0.86233 0.89008 0.86755 0.92077 0.89372 0.88231 0.75998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 7.73 71.98 0.56 -3.48 16 2 C -0.11 -4.37 0.35 -52.67 -0.02 -4.39 16 3 C 0.05 3.03 3.69 29.85 0.11 3.14 16 4 C -0.49 -30.31 6.78 25.60 0.17 -30.13 16 5 H 0.05 3.08 6.14 -2.91 -0.02 3.07 16 6 C -0.01 -0.66 5.46 84.66 0.46 -0.19 16 7 N -0.94 -61.80 13.29 21.45 0.28 -61.51 16 8 Si 0.96 48.74 29.54 68.60 2.03 50.77 16 9 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.36 14.27 5.60 29.47 0.16 14.44 16 13 O -0.48 -24.41 15.33 -1.46 -0.02 -24.43 16 14 C -0.16 -4.08 5.89 30.11 0.18 -3.90 16 15 C -0.10 -1.92 5.94 30.66 0.18 -1.74 16 16 C -0.15 -2.89 5.27 30.56 0.16 -2.73 16 17 C 0.12 3.88 2.54 30.66 0.08 3.96 16 18 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 19 O -0.57 -18.26 12.04 -148.98 -1.79 -20.05 16 20 H 0.09 2.33 5.97 -2.39 -0.01 2.31 16 21 H 0.06 2.21 7.57 -2.39 -0.02 2.19 16 22 H 0.04 1.63 6.62 -2.38 -0.02 1.61 16 23 H -0.03 -1.88 8.14 -2.39 -0.02 -1.89 16 24 H 0.00 -0.14 7.86 -2.39 -0.02 -0.16 16 25 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.12 2.39 7.79 -2.39 -0.02 2.37 16 27 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.62 6.42 -2.38 -0.02 1.60 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.39 7.78 9.08 -74.05 -0.67 7.11 16 Total: -1.00 -81.14 255.37 2.98 -78.15 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 0.44 Total: 2.11 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 2.05 Total: -25.03 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.28 Total: -61.51 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.82 Total: -44.49 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -81.14 2.98 -78.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.122 kcal (2) G-P(sol) polarization free energy of solvation -81.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds