Wall clock time and date at job start Mon Mar 30 2020 02:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.78347 * 2 1 4 4 C 1.50704 * 109.47021 * 60.47162 * 3 2 1 5 5 H 1.07993 * 120.00130 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99838 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99885 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99818 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47126 * 90.00414 * 8 6 4 10 10 H 1.48501 * 109.47140 * 210.00012 * 8 6 4 11 11 H 1.48490 * 109.47331 * 330.00174 * 8 6 4 12 12 C 1.51272 * 109.62080 * 120.47541 * 2 1 3 13 13 O 1.20763 * 120.84846 * 248.33899 * 12 2 1 14 14 C 1.51275 * 118.29976 * 68.61893 * 12 2 1 15 15 C 1.52796 * 108.76308 * 51.03588 * 14 12 2 16 16 C 1.52961 * 109.48283 * 305.60894 * 15 14 12 17 17 C 1.52953 * 109.82021 * 63.46833 * 16 15 14 18 18 H 1.09001 * 109.48502 * 176.41762 * 17 16 15 19 19 O 1.42910 * 109.48460 * 56.38132 * 17 16 15 20 20 H 1.09004 * 109.47206 * 299.52824 * 1 2 3 21 21 H 1.09007 * 109.46924 * 59.52043 * 1 2 3 22 22 H 1.08991 * 109.47482 * 179.52167 * 1 2 3 23 23 H 1.08994 * 109.47692 * 180.47340 * 3 2 1 24 24 H 1.09005 * 109.47103 * 300.47565 * 3 2 1 25 25 H 0.97010 * 119.99521 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.62252 * 170.80566 * 14 12 2 27 27 H 1.08993 * 109.62453 * 291.37978 * 14 12 2 28 28 H 1.08996 * 109.55192 * 185.54107 * 15 14 12 29 29 H 1.08998 * 109.34874 * 65.55067 * 15 14 12 30 30 H 1.09002 * 109.41133 * 303.35870 * 16 15 14 31 31 H 1.09005 * 109.35327 * 183.53682 * 16 15 14 32 32 H 0.96700 * 113.99738 * 60.06471 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0478 1.4397 0.0000 4 6 1.5589 2.1494 1.2363 5 1 0.9411 1.6258 1.9507 6 6 1.9013 3.4668 1.4558 7 7 2.6542 4.1042 0.5860 8 14 1.2959 4.3462 2.9886 9 1 2.2818 4.1665 4.0844 10 1 1.1368 5.7939 2.6984 11 1 -0.0122 3.7776 3.4015 12 6 2.0380 -0.7227 1.2280 13 8 2.6064 -0.1229 2.1087 14 6 1.8214 -2.2169 1.3217 15 6 2.3206 -2.8677 0.0326 16 6 1.6429 -2.2060 -1.1685 17 6 2.0446 -0.7321 -1.2438 18 1 1.6102 -0.2820 -2.1364 19 8 3.4688 -0.6287 -1.3025 20 1 -0.3634 0.5065 0.8942 21 1 -0.3633 0.5213 -0.8857 22 1 -0.3634 -1.0275 -0.0086 23 1 3.1377 1.4338 -0.0085 24 1 1.6804 1.9580 -0.8857 25 1 2.8948 5.0312 0.7403 26 1 2.3776 -2.6149 2.1706 27 1 0.7589 -2.4257 1.4462 28 1 2.0817 -3.9310 0.0445 29 1 3.4003 -2.7384 -0.0426 30 1 0.5608 -2.2816 -1.0609 31 1 1.9524 -2.7130 -2.0825 32 1 3.8640 -1.0706 -2.0665 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075575692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:49 Heat of formation + Delta-G solvation = -102.791175 kcal Electronic energy + Delta-G solvation = -15119.819210 eV Core-core repulsion = 12658.923079 eV Total energy + Delta-G solvation = -2460.896131 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87921 -36.92340 -34.16478 -33.77158 -31.73895 -28.51885 -26.97565 -25.34136 -23.07604 -21.44776 -20.61706 -17.52575 -16.55300 -16.30815 -15.47612 -14.65279 -14.58107 -14.16000 -13.97534 -13.16453 -12.91576 -12.43310 -12.06323 -11.87879 -11.58025 -11.46774 -11.30515 -10.90089 -10.86440 -10.61959 -10.51879 -10.20643 -10.10545 -9.63266 -9.23310 -8.83205 -8.28874 -8.08438 -5.80512 -3.77092 2.96622 3.44339 3.49942 3.52459 4.58509 4.62931 4.79372 5.03201 5.07570 5.14057 5.47144 5.55653 5.61452 5.75499 5.88734 5.92237 6.00696 6.06828 6.11736 6.20705 6.28032 6.42523 6.69458 6.89427 7.04330 7.75289 7.99012 8.08758 8.17444 8.54067 8.59825 9.22644 9.81854 11.31705 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.010577 C = 0.009836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.250519 B = 2646.576731 C = 2846.032434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C 0.046 3.954 4 C -0.488 4.488 5 H 0.052 0.948 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.369 3.631 13 O -0.418 6.418 14 C -0.173 4.173 15 C -0.105 4.105 16 C -0.159 4.159 17 C 0.116 3.884 18 H 0.058 0.942 19 O -0.552 6.552 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.017 0.983 25 H 0.257 0.743 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -13.736 -4.762 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.096 4.096 3 C 0.009 3.991 4 C -0.527 4.527 5 H 0.070 0.930 6 C -0.146 4.146 7 N -0.542 5.542 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.240 3.760 13 O -0.287 6.287 14 C -0.211 4.211 15 C -0.143 4.143 16 C -0.196 4.196 17 C 0.057 3.943 18 H 0.076 0.924 19 O -0.355 6.355 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.165 -12.891 -3.742 13.792 hybrid contribution -0.255 0.135 0.239 0.375 sum -3.421 -12.756 -3.503 13.664 Atomic orbital electron populations 1.21697 0.92782 0.99919 1.03733 1.21390 0.96236 1.00200 0.91768 1.18975 0.97422 0.85672 0.97065 1.21084 1.30303 0.95608 1.05663 0.92974 1.24922 0.95674 0.97726 0.96304 1.69974 1.37774 1.10835 1.35587 0.86658 0.79035 0.78586 0.84067 1.20856 1.21530 1.20161 1.24437 0.75758 0.89071 0.86768 1.90423 1.29815 1.69799 1.38654 1.22301 1.02812 0.96720 0.99305 1.21268 1.01278 0.98503 0.93243 1.22368 1.01779 0.97144 0.98339 1.21866 0.81435 0.92930 0.98053 0.92388 1.86721 1.19839 1.78980 1.49991 0.90881 0.92097 0.93895 0.95084 0.96441 0.93382 0.90334 0.89491 0.91842 0.91099 0.90494 0.91865 0.78924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 7.94 37.16 0.30 -1.90 16 2 C -0.09 -1.95 0.37 -155.26 -0.06 -2.01 16 3 C 0.05 1.23 3.61 -27.88 -0.10 1.12 16 4 C -0.49 -14.36 6.77 -34.44 -0.23 -14.60 16 5 H 0.05 1.52 6.13 -52.49 -0.32 1.20 16 6 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 7 N -0.90 -28.47 13.29 55.43 0.74 -27.73 16 8 Si 0.89 23.19 29.54 -169.99 -5.02 18.16 16 9 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.37 7.75 5.35 -28.47 -0.15 7.60 16 13 O -0.42 -10.89 15.27 6.00 0.09 -10.79 16 14 C -0.17 -2.64 5.87 -27.71 -0.16 -2.80 16 15 C -0.11 -1.33 5.80 -26.86 -0.16 -1.49 16 16 C -0.16 -1.93 5.39 -26.78 -0.14 -2.08 16 17 C 0.12 1.90 2.76 -26.64 -0.07 1.83 16 18 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 19 O -0.55 -9.61 11.29 -35.23 -0.40 -10.01 16 20 H 0.07 1.44 6.69 -51.93 -0.35 1.09 16 21 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 22 H 0.04 0.59 5.99 -51.93 -0.31 0.28 16 23 H 0.03 0.95 7.53 -51.93 -0.39 0.56 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.14 7.83 -51.93 -0.41 0.73 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.97 7.50 -51.93 -0.39 0.58 16 30 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.37 4.30 9.08 45.56 0.41 4.71 16 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -35.25 254.34 -5.40 -40.64 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.76 Total: -1.30 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.88 Total: -12.81 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.74 Total: -27.73 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.31 Total: -20.80 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.25 -5.40 -40.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.148 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds