Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.78347 * 2 1 4 4 C 1.50704 * 109.47021 * 60.47162 * 3 2 1 5 5 H 1.07993 * 120.00130 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99838 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99885 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99818 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47126 * 90.00414 * 8 6 4 10 10 H 1.48501 * 109.47140 * 210.00012 * 8 6 4 11 11 H 1.48490 * 109.47331 * 330.00174 * 8 6 4 12 12 C 1.51272 * 109.62080 * 120.47541 * 2 1 3 13 13 O 1.20763 * 120.84846 * 248.33899 * 12 2 1 14 14 C 1.51275 * 118.29976 * 68.61893 * 12 2 1 15 15 C 1.52796 * 108.76308 * 51.03588 * 14 12 2 16 16 C 1.52961 * 109.48283 * 305.60894 * 15 14 12 17 17 C 1.52953 * 109.82021 * 63.46833 * 16 15 14 18 18 H 1.09001 * 109.48502 * 176.41762 * 17 16 15 19 19 O 1.42910 * 109.48460 * 56.38132 * 17 16 15 20 20 H 1.09004 * 109.47206 * 299.52824 * 1 2 3 21 21 H 1.09007 * 109.46924 * 59.52043 * 1 2 3 22 22 H 1.08991 * 109.47482 * 179.52167 * 1 2 3 23 23 H 1.08994 * 109.47692 * 180.47340 * 3 2 1 24 24 H 1.09005 * 109.47103 * 300.47565 * 3 2 1 25 25 H 0.97010 * 119.99521 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.62252 * 170.80566 * 14 12 2 27 27 H 1.08993 * 109.62453 * 291.37978 * 14 12 2 28 28 H 1.08996 * 109.55192 * 185.54107 * 15 14 12 29 29 H 1.08998 * 109.34874 * 65.55067 * 15 14 12 30 30 H 1.09002 * 109.41133 * 303.35870 * 16 15 14 31 31 H 1.09005 * 109.35327 * 183.53682 * 16 15 14 32 32 H 0.96700 * 113.99738 * 60.06471 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0478 1.4397 0.0000 4 6 1.5589 2.1494 1.2363 5 1 0.9411 1.6258 1.9507 6 6 1.9013 3.4668 1.4558 7 7 2.6542 4.1042 0.5860 8 14 1.2959 4.3462 2.9886 9 1 2.2818 4.1665 4.0844 10 1 1.1368 5.7939 2.6984 11 1 -0.0122 3.7776 3.4015 12 6 2.0380 -0.7227 1.2280 13 8 2.6064 -0.1229 2.1087 14 6 1.8214 -2.2169 1.3217 15 6 2.3206 -2.8677 0.0326 16 6 1.6429 -2.2060 -1.1685 17 6 2.0446 -0.7321 -1.2438 18 1 1.6102 -0.2820 -2.1364 19 8 3.4688 -0.6287 -1.3025 20 1 -0.3634 0.5065 0.8942 21 1 -0.3633 0.5213 -0.8857 22 1 -0.3634 -1.0275 -0.0086 23 1 3.1377 1.4338 -0.0085 24 1 1.6804 1.9580 -0.8857 25 1 2.8948 5.0312 0.7403 26 1 2.3776 -2.6149 2.1706 27 1 0.7589 -2.4257 1.4462 28 1 2.0817 -3.9310 0.0445 29 1 3.4003 -2.7384 -0.0426 30 1 0.5608 -2.2816 -1.0609 31 1 1.9524 -2.7130 -2.0825 32 1 3.8640 -1.0706 -2.0665 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075575692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = -129.903453 kcal Electronic energy + Delta-G solvation = -15120.994887 eV Core-core repulsion = 12658.923079 eV Total energy + Delta-G solvation = -2462.071808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37898 -38.45017 -35.80277 -35.32051 -33.68764 -29.79249 -28.93959 -26.82872 -24.94221 -22.88761 -22.02327 -19.02444 -18.49650 -17.84916 -16.95099 -16.46090 -16.12981 -15.81109 -15.42572 -14.64254 -14.33725 -14.25958 -13.62721 -13.37645 -13.19326 -12.97573 -12.82043 -12.72289 -12.58484 -12.30640 -12.20995 -11.76848 -11.58745 -11.22943 -10.96212 -10.66146 -10.50346 -9.81162 -8.13861 -6.17162 1.32053 1.36354 1.37492 1.45163 2.41895 3.18589 3.30563 3.46623 3.84942 4.00701 4.09427 4.19199 4.40539 4.56794 4.57212 4.63972 4.82094 4.94962 4.96686 5.12472 5.13400 5.29881 5.36319 5.39155 5.48673 5.52226 5.75945 5.88081 6.29433 6.89755 6.97557 7.08788 7.45709 8.99039 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.010577 C = 0.009836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.250519 B = 2646.576731 C = 2846.032434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C 0.055 3.945 4 C -0.493 4.493 5 H 0.050 0.950 6 C -0.011 4.011 7 N -0.940 5.940 8 Si 0.954 3.046 9 H -0.285 1.285 10 H -0.278 1.278 11 H -0.261 1.261 12 C 0.361 3.639 13 O -0.489 6.489 14 C -0.165 4.165 15 C -0.102 4.102 16 C -0.147 4.147 17 C 0.114 3.886 18 H 0.064 0.936 19 O -0.585 6.585 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.094 0.906 23 H -0.022 1.022 24 H -0.007 1.007 25 H 0.258 0.742 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -16.477 -5.146 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.107 4.107 3 C 0.018 3.982 4 C -0.531 4.531 5 H 0.068 0.932 6 C -0.206 4.206 7 N -0.583 5.583 8 Si 0.780 3.220 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.185 1.185 12 C 0.238 3.762 13 O -0.363 6.363 14 C -0.202 4.202 15 C -0.140 4.140 16 C -0.184 4.184 17 C 0.056 3.944 18 H 0.082 0.918 19 O -0.393 6.393 20 H 0.064 0.936 21 H 0.084 0.916 22 H 0.112 0.888 23 H -0.003 1.003 24 H 0.011 0.989 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.011 -15.667 -4.161 16.967 hybrid contribution 0.367 0.980 0.304 1.090 sum -4.644 -14.688 -3.857 15.880 Atomic orbital electron populations 1.21663 0.90315 1.02912 1.02645 1.21430 0.98279 0.96456 0.94564 1.18709 0.94052 0.90372 0.95033 1.21431 1.29594 0.95838 1.06261 0.93178 1.25874 0.96123 0.98937 0.99715 1.70116 1.39289 1.11204 1.37681 0.85609 0.78903 0.77812 0.79713 1.21189 1.20279 1.18475 1.25349 0.73408 0.92105 0.85372 1.90395 1.33156 1.71931 1.40799 1.22313 1.05111 0.91515 1.01285 1.21341 1.00357 1.00658 0.91606 1.22320 1.02970 0.93271 0.99819 1.21898 0.80914 0.95895 0.95704 0.91801 1.86673 1.20891 1.80035 1.51727 0.93607 0.91589 0.88777 1.00315 0.98899 0.93309 0.90148 0.86116 0.87515 0.92668 0.88309 0.88247 0.76231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 7.94 71.98 0.57 -3.39 16 2 C -0.11 -4.34 0.37 -52.67 -0.02 -4.36 16 3 C 0.06 3.14 3.61 29.85 0.11 3.24 16 4 C -0.49 -30.21 6.77 25.60 0.17 -30.04 16 5 H 0.05 3.02 6.13 -2.91 -0.02 3.00 16 6 C -0.01 -0.69 5.46 84.65 0.46 -0.23 16 7 N -0.94 -62.01 13.29 21.45 0.28 -61.72 16 8 Si 0.95 48.84 29.54 68.60 2.03 50.87 16 9 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.36 15.14 5.35 29.47 0.16 15.29 16 13 O -0.49 -26.48 15.27 -1.46 -0.02 -26.51 16 14 C -0.16 -4.47 5.87 29.96 0.18 -4.29 16 15 C -0.10 -2.09 5.80 30.51 0.18 -1.92 16 16 C -0.15 -2.80 5.39 30.57 0.16 -2.64 16 17 C 0.11 3.54 2.76 30.65 0.08 3.62 16 18 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 19 O -0.59 -20.33 11.29 -148.98 -1.68 -22.01 16 20 H 0.04 1.76 6.69 -2.38 -0.02 1.75 16 21 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 22 H 0.09 2.16 5.99 -2.39 -0.01 2.15 16 23 H -0.02 -1.43 7.53 -2.39 -0.02 -1.45 16 24 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 25 H 0.26 16.04 8.31 -92.70 -0.77 15.26 16 26 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.12 2.51 7.83 -2.39 -0.02 2.49 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.33 7.50 -2.39 -0.02 1.31 16 30 H 0.10 1.52 6.40 -2.39 -0.02 1.51 16 31 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.39 8.68 9.08 -74.06 -0.67 8.01 16 Total: -1.00 -83.50 254.34 3.10 -80.40 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.44 Total: 3.67 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 2.06 Total: -24.70 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.28 Total: -61.72 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -1.70 Total: -48.51 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -83.50 3.10 -80.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.504 kcal (2) G-P(sol) polarization free energy of solvation -83.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds