Wall clock time and date at job start Mon Mar 30 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.62537 * 2 1 4 4 C 1.50708 * 109.46973 * 299.61991 * 3 2 1 5 5 H 1.07991 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.51273 * 109.63025 * 239.61890 * 2 1 3 13 13 O 1.20762 * 120.84790 * 111.45652 * 12 2 1 14 14 C 1.51260 * 118.29875 * 291.44293 * 12 2 1 15 15 C 1.53232 * 108.53821 * 308.64886 * 14 12 2 16 16 C 1.52953 * 109.40293 * 54.62596 * 15 14 12 17 17 C 1.52953 * 109.82184 * 296.40363 * 16 15 14 18 18 H 1.09001 * 109.48516 * 303.62385 * 17 16 15 19 19 O 1.42896 * 109.48806 * 183.57947 * 17 16 15 20 20 H 1.08996 * 109.47126 * 60.00141 * 1 2 3 21 21 H 1.09001 * 109.46370 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46792 * 299.99858 * 1 2 3 23 23 H 1.08994 * 109.48028 * 179.62048 * 3 2 1 24 24 H 1.09000 * 109.47206 * 59.61903 * 3 2 1 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.63198 * 68.36431 * 14 12 2 27 27 H 1.09001 * 109.62833 * 188.74172 * 14 12 2 28 28 H 1.08998 * 109.48554 * 174.61287 * 15 14 12 29 29 H 1.09008 * 109.48152 * 294.64729 * 15 14 12 30 30 H 1.09002 * 109.41530 * 56.51263 * 16 15 14 31 31 H 1.09004 * 109.41184 * 176.36449 * 16 15 14 32 32 H 0.96701 * 114.00343 * 60.06064 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 1.5511 2.1501 -1.2352 5 1 0.9329 1.6255 -1.9485 6 6 1.8886 3.4689 -1.4540 7 7 1.4582 4.0878 -2.5317 8 14 2.9573 4.3766 -0.2198 9 1 2.0941 5.0255 0.7996 10 1 3.7560 5.4120 -0.9235 11 1 3.8714 3.4141 0.4459 12 6 2.0382 -0.7206 -1.2292 13 8 2.6034 -0.1187 -2.1104 14 6 1.8205 -2.2143 -1.3260 15 6 2.3286 -2.8654 -0.0352 16 6 1.6509 -2.2063 1.1672 17 6 2.0487 -0.7313 1.2427 18 1 3.1348 -0.6494 1.2857 19 8 1.4793 -0.1433 2.4140 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1338 1.4384 0.0068 24 1 1.6764 1.9579 0.8865 25 1 1.6960 5.0155 -2.6857 26 1 0.7574 -2.4224 -1.4470 27 1 2.3704 -2.6099 -2.1799 28 1 2.0927 -3.9294 -0.0475 29 1 3.4081 -2.7330 0.0382 30 1 0.5689 -2.2848 1.0613 31 1 1.9630 -2.7119 2.0811 32 1 1.7642 -0.5573 3.2402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075575693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:50 Heat of formation + Delta-G solvation = -99.970597 kcal Electronic energy + Delta-G solvation = -15080.649693 eV Core-core repulsion = 12619.875871 eV Total energy + Delta-G solvation = -2460.773822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.97807 -37.14330 -34.49484 -33.76150 -31.71415 -28.52341 -27.58471 -25.53294 -22.83315 -21.52736 -20.47563 -17.65629 -16.92058 -16.75303 -15.33077 -14.88793 -14.32684 -14.27332 -13.67262 -13.52716 -13.06427 -12.99362 -12.37181 -12.02290 -11.60287 -11.49923 -11.39891 -11.11065 -10.83645 -10.72811 -10.57100 -10.23454 -9.83652 -9.60771 -9.36494 -9.00914 -8.50593 -8.27656 -5.85505 -3.78642 2.74900 3.41885 3.48094 3.53067 4.39181 4.60604 4.72065 4.90514 4.94316 5.09443 5.35459 5.47768 5.48771 5.59642 5.72326 5.87496 5.89448 5.96789 6.05749 6.14674 6.32964 6.36071 6.68384 6.84921 7.05549 7.28746 7.46048 7.89033 7.96190 8.36677 8.69433 9.18378 9.76566 11.28563 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.011755 C = 0.010207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.550715 B = 2381.458718 C = 2742.669444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C 0.005 3.995 4 C -0.489 4.489 5 H 0.073 0.927 6 C 0.063 3.937 7 N -0.908 5.908 8 Si 0.875 3.125 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.268 1.268 12 C 0.358 3.642 13 O -0.406 6.406 14 C -0.174 4.174 15 C -0.108 4.108 16 C -0.157 4.157 17 C 0.116 3.884 18 H 0.052 0.948 19 O -0.553 6.553 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.067 0.933 23 H 0.013 0.987 24 H 0.026 0.974 25 H 0.259 0.741 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -14.272 8.804 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.032 4.032 4 C -0.527 4.527 5 H 0.091 0.909 6 C -0.136 4.136 7 N -0.549 5.549 8 Si 0.704 3.296 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.193 1.193 12 C 0.228 3.772 13 O -0.274 6.274 14 C -0.212 4.212 15 C -0.145 4.145 16 C -0.195 4.195 17 C 0.057 3.943 18 H 0.070 0.930 19 O -0.357 6.357 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.031 0.969 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.547 -13.376 7.765 15.477 hybrid contribution 0.829 0.135 1.021 1.322 sum 1.375 -13.241 8.786 15.951 Atomic orbital electron populations 1.21598 0.92321 0.99868 1.03784 1.21192 0.98041 0.98433 0.90820 1.19525 0.95867 0.89503 0.98321 1.20974 1.31093 0.95780 1.04898 0.90943 1.24931 0.95907 0.97543 0.95232 1.69908 1.46694 1.11460 1.26810 0.86850 0.81340 0.79682 0.81778 1.20475 1.21635 1.19328 1.24508 0.76158 0.89368 0.87145 1.90483 1.29280 1.69381 1.38255 1.22397 1.03502 0.96111 0.99210 1.21368 1.00424 0.99387 0.93343 1.22372 1.02369 0.96500 0.98252 1.21857 0.95971 0.90375 0.86065 0.93037 1.86627 1.72566 1.61126 1.15353 0.91201 0.94173 0.91438 0.96856 0.95557 0.93090 0.88959 0.89877 0.91078 0.91680 0.90342 0.91752 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 7.73 37.16 0.29 -1.94 16 2 C -0.08 -1.68 0.35 -155.26 -0.05 -1.73 16 3 C 0.01 0.13 2.76 -27.88 -0.08 0.05 16 4 C -0.49 -14.50 7.31 -34.44 -0.25 -14.75 16 5 H 0.07 2.31 6.37 -52.49 -0.33 1.98 16 6 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.91 -29.41 13.96 55.43 0.77 -28.64 16 8 Si 0.88 23.11 27.47 -169.99 -4.67 18.44 16 9 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 11 H -0.27 -6.88 6.54 56.52 0.37 -6.51 16 12 C 0.36 7.14 5.59 -28.48 -0.16 6.98 16 13 O -0.41 -10.13 15.27 6.00 0.09 -10.04 16 14 C -0.17 -2.46 5.90 -27.49 -0.16 -2.62 16 15 C -0.11 -1.21 5.94 -26.64 -0.16 -1.37 16 16 C -0.16 -1.83 5.27 -26.78 -0.14 -1.97 16 17 C 0.12 1.82 2.55 -26.63 -0.07 1.75 16 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 19 O -0.55 -8.38 12.07 -35.23 -0.43 -8.80 16 20 H 0.07 1.49 6.66 -51.93 -0.35 1.14 16 21 H 0.04 0.61 6.00 -51.93 -0.31 0.29 16 22 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16 23 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 24 H 0.03 0.67 7.31 -51.93 -0.38 0.29 16 25 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 26 H 0.09 1.17 7.81 -51.93 -0.41 0.76 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 0.92 6.42 -51.93 -0.33 0.58 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.37 3.59 9.08 45.56 0.41 4.00 16 LS Contribution 251.85 15.07 3.80 3.80 Total: -1.00 -35.19 251.85 -5.06 -40.25 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.74 Total: -1.24 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.88 Total: -13.77 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.77 Total: -28.64 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.33 Total: -18.84 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.67 Total: 18.44 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.19 -5.06 -40.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.724 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds