Wall clock time and date at job start Mon Mar 30 2020 02:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.62537 * 2 1
4 4 C 1.50708 * 109.46973 * 299.61991 * 3 2 1
5 5 H 1.07991 * 119.99789 * 0.02562 * 4 3 2
6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2
7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 3
8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 3
9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4
10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4
11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4
12 12 C 1.51273 * 109.63025 * 239.61890 * 2 1 3
13 13 O 1.20762 * 120.84790 * 111.45652 * 12 2 1
14 14 C 1.51260 * 118.29875 * 291.44293 * 12 2 1
15 15 C 1.53232 * 108.53821 * 308.64886 * 14 12 2
16 16 C 1.52953 * 109.40293 * 54.62596 * 15 14 12
17 17 C 1.52953 * 109.82184 * 296.40363 * 16 15 14
18 18 H 1.09001 * 109.48516 * 303.62385 * 17 16 15
19 19 O 1.42896 * 109.48806 * 183.57947 * 17 16 15
20 20 H 1.08996 * 109.47126 * 60.00141 * 1 2 3
21 21 H 1.09001 * 109.46370 * 179.97438 * 1 2 3
22 22 H 1.08998 * 109.46792 * 299.99858 * 1 2 3
23 23 H 1.08994 * 109.48028 * 179.62048 * 3 2 1
24 24 H 1.09000 * 109.47206 * 59.61903 * 3 2 1
25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4
26 26 H 1.09004 * 109.63198 * 68.36431 * 14 12 2
27 27 H 1.09001 * 109.62833 * 188.74172 * 14 12 2
28 28 H 1.08998 * 109.48554 * 174.61287 * 15 14 12
29 29 H 1.09008 * 109.48152 * 294.64729 * 15 14 12
30 30 H 1.09002 * 109.41530 * 56.51263 * 16 15 14
31 31 H 1.09004 * 109.41184 * 176.36449 * 16 15 14
32 32 H 0.96701 * 114.00343 * 60.06064 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0439 1.4411 0.0000
4 6 1.5511 2.1501 -1.2352
5 1 0.9329 1.6255 -1.9485
6 6 1.8886 3.4689 -1.4540
7 7 1.4582 4.0878 -2.5317
8 14 2.9573 4.3766 -0.2198
9 1 2.0941 5.0255 0.7996
10 1 3.7560 5.4120 -0.9235
11 1 3.8714 3.4141 0.4459
12 6 2.0382 -0.7206 -1.2292
13 8 2.6034 -0.1187 -2.1104
14 6 1.8205 -2.2143 -1.3260
15 6 2.3286 -2.8654 -0.0352
16 6 1.6509 -2.2063 1.1672
17 6 2.0487 -0.7313 1.2427
18 1 3.1348 -0.6494 1.2857
19 8 1.4793 -0.1433 2.4140
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3632 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 3.1338 1.4384 0.0068
24 1 1.6764 1.9579 0.8865
25 1 1.6960 5.0155 -2.6857
26 1 0.7574 -2.4224 -1.4470
27 1 2.3704 -2.6099 -2.1799
28 1 2.0927 -3.9294 -0.0475
29 1 3.4081 -2.7330 0.0382
30 1 0.5689 -2.2848 1.0613
31 1 1.9630 -2.7119 2.0811
32 1 1.7642 -0.5573 3.2402
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000075575693.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:17:50
Heat of formation + Delta-G solvation = -99.970597 kcal
Electronic energy + Delta-G solvation = -15080.649693 eV
Core-core repulsion = 12619.875871 eV
Total energy + Delta-G solvation = -2460.773822 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.120 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.97807 -37.14330 -34.49484 -33.76150 -31.71415 -28.52341 -27.58471 -25.53294
-22.83315 -21.52736 -20.47563 -17.65629 -16.92058 -16.75303 -15.33077 -14.88793
-14.32684 -14.27332 -13.67262 -13.52716 -13.06427 -12.99362 -12.37181 -12.02290
-11.60287 -11.49923 -11.39891 -11.11065 -10.83645 -10.72811 -10.57100 -10.23454
-9.83652 -9.60771 -9.36494 -9.00914 -8.50593 -8.27656 -5.85505 -3.78642
2.74900 3.41885 3.48094 3.53067 4.39181 4.60604 4.72065 4.90514
4.94316 5.09443 5.35459 5.47768 5.48771 5.59642 5.72326 5.87496
5.89448 5.96789 6.05749 6.14674 6.32964 6.36071 6.68384 6.84921
7.05549 7.28746 7.46048 7.89033 7.96190 8.36677 8.69433 9.18378
9.76566 11.28563
Molecular weight = 212.12amu
Principal moments of inertia in cm(-1)
A = 0.037149 B = 0.011755 C = 0.010207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 753.550715 B = 2381.458718 C = 2742.669444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.084 4.084
3 C 0.005 3.995
4 C -0.489 4.489
5 H 0.073 0.927
6 C 0.063 3.937
7 N -0.908 5.908
8 Si 0.875 3.125
9 H -0.279 1.279
10 H -0.290 1.290
11 H -0.268 1.268
12 C 0.358 3.642
13 O -0.406 6.406
14 C -0.174 4.174
15 C -0.108 4.108
16 C -0.157 4.157
17 C 0.116 3.884
18 H 0.052 0.948
19 O -0.553 6.553
20 H 0.069 0.931
21 H 0.039 0.961
22 H 0.067 0.933
23 H 0.013 0.987
24 H 0.026 0.974
25 H 0.259 0.741
26 H 0.092 0.908
27 H 0.083 0.917
28 H 0.071 0.929
29 H 0.064 0.936
30 H 0.078 0.922
31 H 0.064 0.936
32 H 0.368 0.632
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.507 -14.272 8.804 16.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.085 4.085
3 C -0.032 4.032
4 C -0.527 4.527
5 H 0.091 0.909
6 C -0.136 4.136
7 N -0.549 5.549
8 Si 0.704 3.296
9 H -0.205 1.205
10 H -0.216 1.216
11 H -0.193 1.193
12 C 0.228 3.772
13 O -0.274 6.274
14 C -0.212 4.212
15 C -0.145 4.145
16 C -0.195 4.195
17 C 0.057 3.943
18 H 0.070 0.930
19 O -0.357 6.357
20 H 0.088 0.912
21 H 0.058 0.942
22 H 0.086 0.914
23 H 0.031 0.969
24 H 0.044 0.956
25 H 0.069 0.931
26 H 0.110 0.890
27 H 0.101 0.899
28 H 0.089 0.911
29 H 0.083 0.917
30 H 0.097 0.903
31 H 0.082 0.918
32 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges 0.547 -13.376 7.765 15.477
hybrid contribution 0.829 0.135 1.021 1.322
sum 1.375 -13.241 8.786 15.951
Atomic orbital electron populations
1.21598 0.92321 0.99868 1.03784 1.21192 0.98041 0.98433 0.90820
1.19525 0.95867 0.89503 0.98321 1.20974 1.31093 0.95780 1.04898
0.90943 1.24931 0.95907 0.97543 0.95232 1.69908 1.46694 1.11460
1.26810 0.86850 0.81340 0.79682 0.81778 1.20475 1.21635 1.19328
1.24508 0.76158 0.89368 0.87145 1.90483 1.29280 1.69381 1.38255
1.22397 1.03502 0.96111 0.99210 1.21368 1.00424 0.99387 0.93343
1.22372 1.02369 0.96500 0.98252 1.21857 0.95971 0.90375 0.86065
0.93037 1.86627 1.72566 1.61126 1.15353 0.91201 0.94173 0.91438
0.96856 0.95557 0.93090 0.88959 0.89877 0.91078 0.91680 0.90342
0.91752 0.78672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.23 7.73 37.16 0.29 -1.94 16
2 C -0.08 -1.68 0.35 -155.26 -0.05 -1.73 16
3 C 0.01 0.13 2.76 -27.88 -0.08 0.05 16
4 C -0.49 -14.50 7.31 -34.44 -0.25 -14.75 16
5 H 0.07 2.31 6.37 -52.49 -0.33 1.98 16
6 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16
7 N -0.91 -29.41 13.96 55.43 0.77 -28.64 16
8 Si 0.88 23.11 27.47 -169.99 -4.67 18.44 16
9 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16
10 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16
11 H -0.27 -6.88 6.54 56.52 0.37 -6.51 16
12 C 0.36 7.14 5.59 -28.48 -0.16 6.98 16
13 O -0.41 -10.13 15.27 6.00 0.09 -10.04 16
14 C -0.17 -2.46 5.90 -27.49 -0.16 -2.62 16
15 C -0.11 -1.21 5.94 -26.64 -0.16 -1.37 16
16 C -0.16 -1.83 5.27 -26.78 -0.14 -1.97 16
17 C 0.12 1.82 2.55 -26.63 -0.07 1.75 16
18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
19 O -0.55 -8.38 12.07 -35.23 -0.43 -8.80 16
20 H 0.07 1.49 6.66 -51.93 -0.35 1.14 16
21 H 0.04 0.61 6.00 -51.93 -0.31 0.29 16
22 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16
23 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16
24 H 0.03 0.67 7.31 -51.93 -0.38 0.29 16
25 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16
26 H 0.09 1.17 7.81 -51.93 -0.41 0.76 16
27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
29 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16
30 H 0.08 0.92 6.42 -51.93 -0.33 0.58 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.37 3.59 9.08 45.56 0.41 4.00 16
LS Contribution 251.85 15.07 3.80 3.80
Total: -1.00 -35.19 251.85 -5.06 -40.25
By element:
Atomic # 1 Polarization: 2.51 SS G_CDS: -3.74 Total: -1.24 kcal
Atomic # 6 Polarization: -12.89 SS G_CDS: -0.88 Total: -13.77 kcal
Atomic # 7 Polarization: -29.41 SS G_CDS: 0.77 Total: -28.64 kcal
Atomic # 8 Polarization: -18.50 SS G_CDS: -0.33 Total: -18.84 kcal
Atomic # 14 Polarization: 23.11 SS G_CDS: -4.67 Total: 18.44 kcal
Total LS contribution 3.80 Total: 3.80 kcal
Total: -35.19 -5.06 -40.25 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075575693.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.724 kcal
(2) G-P(sol) polarization free energy of solvation -35.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds