Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20833 * 119.99747 * 2 1 4 4 O 1.34230 * 120.00262 * 179.71622 * 2 1 3 5 5 C 1.45202 * 116.99836 * 180.27336 * 4 2 1 6 6 C 1.52998 * 109.47569 * 270.00626 * 5 4 2 7 7 C 1.52999 * 109.47002 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47370 * 60.00044 * 7 6 5 9 9 C 1.50698 * 109.47031 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00062 * 119.99845 * 9 8 7 11 11 C 1.37873 * 119.99961 * 299.99362 * 9 8 7 12 12 N 1.31515 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00123 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47065 * 60.00357 * 13 11 9 15 15 H 1.48505 * 109.47412 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47276 * 300.00753 * 13 11 9 17 17 C 1.53007 * 109.47087 * 299.99825 * 8 7 6 18 18 C 1.52999 * 109.46873 * 59.99871 * 17 8 7 19 19 H 1.09001 * 109.47438 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46801 * 120.00543 * 1 2 3 21 21 H 1.09000 * 109.47461 * 240.00011 * 1 2 3 22 22 H 1.09003 * 109.47004 * 30.00649 * 5 4 2 23 23 H 1.09003 * 109.46976 * 300.00040 * 6 5 4 24 24 H 1.08995 * 109.46854 * 59.99838 * 6 5 4 25 25 H 1.08998 * 109.47096 * 299.99198 * 7 6 5 26 26 H 1.09007 * 109.46790 * 179.97438 * 7 6 5 27 27 H 1.09003 * 109.47349 * 59.99842 * 8 7 6 28 28 H 0.97001 * 120.00222 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.46605 * 300.00372 * 17 8 7 30 30 H 1.08995 * 109.46919 * 180.02562 * 17 8 7 31 31 H 1.08998 * 109.46970 * 180.02562 * 18 17 8 32 32 H 1.09003 * 109.47014 * 60.00319 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0465 0.0000 4 8 2.1782 -1.1624 0.0058 5 6 3.6282 -1.0863 0.0116 6 6 4.1435 -1.0631 -1.4288 7 6 5.6714 -0.9835 -1.4226 8 6 6.2427 -2.2028 -0.6961 9 6 7.7476 -2.1247 -0.6906 10 1 8.2834 -2.0944 0.2468 11 6 8.4406 -2.0920 -1.8820 12 7 7.7883 -2.1286 -3.0234 13 14 10.3061 -1.9945 -1.8752 14 1 10.8611 -3.1776 -1.1698 15 1 10.8058 -1.9719 -3.2734 16 1 10.7345 -0.7559 -1.1768 17 6 5.7273 -2.2260 0.7443 18 6 4.1994 -2.3056 0.7381 19 1 -0.3634 1.0276 -0.0005 20 1 -0.3633 -0.5139 -0.8900 21 1 -0.3634 -0.5138 0.8900 22 1 3.9422 -0.1772 0.5245 23 1 3.8295 -1.9722 -1.9418 24 1 3.7362 -0.1947 -1.9465 25 1 5.9858 -0.0746 -0.9096 26 1 6.0386 -0.9675 -2.4488 27 1 5.9283 -3.1117 -1.2092 28 1 8.2759 -2.1052 -3.8617 29 1 6.0417 -1.3171 1.2573 30 1 6.1347 -3.0944 1.2620 31 1 3.8323 -2.3217 1.7642 32 1 3.8851 -3.2145 0.2250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075575696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -134.407613 kcal Electronic energy + Delta-G solvation = -14417.113424 eV Core-core repulsion = 11954.846301 eV Total energy + Delta-G solvation = -2462.267123 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.57452 -39.14199 -37.15824 -34.62208 -31.76930 -31.44669 -30.36861 -26.66819 -23.51408 -23.23020 -21.70668 -20.63620 -18.59972 -18.42004 -17.40066 -17.12183 -16.56824 -15.46456 -14.97986 -14.76130 -14.50712 -14.08326 -13.88595 -13.41506 -13.22080 -13.07305 -12.89830 -12.75269 -12.47505 -12.36004 -12.10907 -11.92529 -11.59107 -11.44178 -11.26029 -10.82024 -10.57384 -10.38920 -8.08411 -6.22373 1.22937 1.42152 1.43417 1.50877 1.81992 2.43956 3.18504 3.74643 3.76059 3.85854 4.16201 4.43773 4.45031 4.52138 4.61456 4.66090 4.71596 4.81387 4.87094 4.98797 5.08291 5.18352 5.29384 5.35186 5.51419 5.63216 5.67967 5.98442 6.12084 6.38358 6.77036 6.89697 7.45930 8.95970 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.065249 B = 0.006952 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.021472 B = 4026.526781 C = 4195.486468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.446 3.554 3 O -0.560 6.560 4 O -0.356 6.356 5 C 0.098 3.902 6 C -0.121 4.121 7 C -0.098 4.098 8 C 0.041 3.959 9 C -0.535 4.535 10 H 0.055 0.945 11 C 0.011 3.989 12 N -0.918 5.918 13 Si 0.953 3.047 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.100 4.100 18 C -0.101 4.101 19 H 0.108 0.892 20 H 0.119 0.881 21 H 0.124 0.876 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.002 0.998 28 H 0.260 0.740 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 0.860 5.941 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.292 3.708 3 O -0.451 6.451 4 O -0.272 6.272 5 C 0.043 3.957 6 C -0.158 4.158 7 C -0.136 4.136 8 C 0.023 3.977 9 C -0.573 4.573 10 H 0.073 0.927 11 C -0.187 4.187 12 N -0.558 5.558 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.138 4.138 18 C -0.139 4.139 19 H 0.127 0.873 20 H 0.137 0.863 21 H 0.143 0.857 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.747 1.139 5.754 14.032 hybrid contribution 1.372 0.307 -0.470 1.482 sum -11.376 1.446 5.284 12.626 Atomic orbital electron populations 1.21784 0.82737 1.07045 1.07710 1.25055 0.94172 0.81016 0.70545 1.90669 1.72292 1.34484 1.47701 1.86534 1.22343 1.35179 1.83189 1.22744 0.75461 1.00292 0.97172 1.21869 0.97639 1.00915 0.95421 1.21389 0.91279 0.98312 1.02655 1.18694 0.93902 0.93336 0.91782 1.21583 0.93022 1.50328 0.92405 0.92720 1.25757 1.02710 0.94868 0.95380 1.70001 1.36762 1.51399 0.97644 0.85685 0.80620 0.78826 0.76964 1.19425 1.21071 1.19869 1.21495 0.93027 1.01126 0.98119 1.21567 0.95544 0.96245 1.00510 0.87306 0.86266 0.85745 0.91552 0.91890 0.93618 0.95644 0.91624 0.97974 0.93056 0.93218 0.91532 0.89673 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 10.43 71.23 0.74 -1.25 16 2 C 0.45 12.73 8.04 71.23 0.57 13.30 16 3 O -0.56 -20.77 16.30 21.94 0.36 -20.41 16 4 O -0.36 -11.18 9.88 -51.41 -0.51 -11.69 16 5 C 0.10 3.59 2.45 30.59 0.08 3.66 16 6 C -0.12 -5.03 5.56 30.59 0.17 -4.86 16 7 C -0.10 -4.85 4.98 30.59 0.15 -4.70 16 8 C 0.04 2.08 2.10 -11.54 -0.02 2.05 16 9 C -0.54 -29.69 8.56 25.60 0.22 -29.47 16 10 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 11 C 0.01 0.63 5.30 84.65 0.45 1.08 16 12 N -0.92 -53.72 11.32 21.45 0.24 -53.47 16 13 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 C -0.10 -4.06 5.14 30.60 0.16 -3.90 16 18 C -0.10 -3.45 5.58 30.59 0.17 -3.28 16 19 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 20 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 21 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 2.62 7.16 -2.39 -0.02 2.60 16 23 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 3.66 6.07 -2.38 -0.01 3.65 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -66.10 265.33 5.89 -60.21 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.08 Total: 6.72 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 2.69 Total: -27.36 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.24 Total: -53.47 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.15 Total: -32.11 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.10 5.89 -60.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.195 kcal (2) G-P(sol) polarization free energy of solvation -66.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds