Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.89836 * 2 1 4 4 C 1.54388 * 109.83293 * 239.06381 * 2 1 3 5 5 C 1.55297 * 102.25512 * 219.12956 * 4 2 1 6 6 C 1.54953 * 100.94264 * 34.13403 * 5 4 2 7 7 H 1.09004 * 110.30890 * 82.56915 * 6 5 4 8 8 C 1.50699 * 110.30885 * 204.63693 * 6 5 4 9 9 O 1.20764 * 119.99898 * 103.61042 * 8 6 5 10 10 C 1.50699 * 120.00160 * 283.60945 * 8 6 5 11 11 C 1.53006 * 109.46866 * 180.02562 * 10 8 6 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47141 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47494 * 119.99680 * 16 14 12 19 19 H 1.48505 * 109.47047 * 239.99860 * 16 14 12 20 20 O 1.43379 * 109.75048 * 120.95467 * 2 1 3 21 21 H 1.08998 * 109.46869 * 180.93622 * 1 2 3 22 22 H 1.08996 * 109.47088 * 300.93517 * 1 2 3 23 23 H 1.08993 * 109.46888 * 60.93370 * 1 2 3 24 24 H 1.09004 * 110.84292 * 100.93846 * 4 2 1 25 25 H 1.09002 * 110.84744 * 337.32584 * 4 2 1 26 26 H 1.09005 * 111.13019 * 276.21669 * 5 4 2 27 27 H 1.09004 * 111.16319 * 152.06721 * 5 4 2 28 28 H 1.09000 * 109.47247 * 60.00277 * 10 8 6 29 29 H 1.09001 * 109.47358 * 299.99703 * 10 8 6 30 30 H 1.08993 * 109.46955 * 300.00219 * 11 10 8 31 31 H 1.09000 * 109.47050 * 60.00048 * 11 10 8 32 32 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0538 -0.7466 -1.2457 5 6 3.2730 -1.5222 -0.6767 6 6 2.7747 -1.8445 0.7546 7 1 2.1415 -2.7316 0.7440 8 6 3.9448 -2.0491 1.6821 9 8 4.2557 -1.1815 2.4624 10 6 4.7268 -3.3365 1.6358 11 6 5.8521 -3.2871 2.6714 12 6 6.6337 -4.5747 2.6255 13 1 6.3554 -5.3508 1.9279 14 6 7.7035 -4.7624 3.4749 15 7 8.0421 -3.8175 4.3247 16 14 8.6728 -6.3581 3.4176 17 1 8.0944 -7.2518 2.3821 18 1 10.0898 -6.0650 3.0836 19 1 8.6045 -7.0266 4.7419 20 8 2.0145 -0.6941 1.1572 21 1 -0.3633 -1.0275 0.0168 22 1 -0.3633 0.5283 0.8814 23 1 -0.3633 0.4992 -0.8982 24 1 2.3672 -0.0425 -2.0166 25 1 1.3012 -1.4350 -1.6304 26 1 4.1621 -0.8921 -0.6506 27 1 3.4580 -2.4349 -1.2431 28 1 5.1533 -3.4670 0.6412 29 1 4.0641 -4.1725 1.8596 30 1 6.5148 -2.4511 2.4481 31 1 5.4253 -3.1568 3.6658 32 1 8.7948 -3.9494 4.9220 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075575702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -103.380944 kcal Electronic energy + Delta-G solvation = -13966.394778 eV Core-core repulsion = 11505.473073 eV Total energy + Delta-G solvation = -2460.921705 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01217 -38.01540 -33.51096 -32.36214 -31.92721 -30.80136 -27.36572 -25.25440 -22.69717 -21.54665 -20.79942 -18.89281 -17.01730 -16.38087 -15.97404 -15.02237 -14.47782 -14.41015 -14.31331 -13.77334 -13.50929 -12.64036 -12.36230 -12.24929 -12.08265 -11.83938 -11.62848 -11.07351 -10.99558 -10.95665 -10.93270 -10.58945 -9.98321 -9.80868 -9.64341 -9.13911 -8.61794 -8.34326 -5.97558 -4.02135 2.53192 3.31911 3.38976 3.42255 3.66524 4.31547 4.45029 4.55515 4.64303 5.01785 5.09359 5.18175 5.24925 5.37493 5.45137 5.54848 5.58074 5.75104 5.86975 5.92389 5.98964 6.09887 6.21982 6.27958 6.89428 7.07936 7.71234 7.81317 8.03460 8.15002 8.41406 9.05976 9.61824 11.13525 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.076102 B = 0.005621 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.837663 B = 4980.065543 C = 5170.724127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.071 3.929 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.141 4.141 6 C 0.028 3.972 7 H 0.094 0.906 8 C 0.347 3.653 9 O -0.431 6.431 10 C -0.156 4.156 11 C 0.030 3.970 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 O -0.358 6.358 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.809 4.201 -12.230 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.179 4.179 6 C -0.030 4.030 7 H 0.111 0.889 8 C 0.220 3.780 9 O -0.302 6.302 10 C -0.193 4.193 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 O -0.278 6.278 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.554 4.786 -11.449 17.652 hybrid contribution 0.528 -0.975 -0.252 1.137 sum -12.026 3.811 -11.702 17.207 Atomic orbital electron populations 1.22132 0.94979 1.02544 1.02158 1.22791 0.94236 0.96597 0.85081 0.90338 1.23196 0.97712 0.99720 0.98035 1.23159 0.98864 1.01799 0.94056 1.23648 0.93705 0.90670 0.94997 0.88873 1.25101 0.83043 0.89346 0.80549 1.90376 1.63780 1.43453 1.32552 1.22191 0.99670 0.93836 1.03610 1.18960 0.91358 0.97299 0.93136 1.21250 1.13668 1.01496 1.20017 0.92471 1.25039 0.97368 0.96638 0.95383 1.70007 1.27903 1.32903 1.22104 0.86528 0.79908 0.83621 0.77865 1.19720 1.21004 1.20994 1.88592 1.69877 1.39927 1.29370 0.92184 0.91920 0.91673 0.89888 0.90202 0.89880 0.88880 0.89669 0.89633 0.95968 0.95924 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.44 37.16 0.35 -1.18 16 2 C 0.07 0.83 4.16 -26.00 -0.11 0.72 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.15 -1.41 6.54 -24.79 -0.16 -1.57 16 5 C -0.14 -1.64 6.56 -24.48 -0.16 -1.80 16 6 C 0.03 0.42 3.79 -26.85 -0.10 0.32 16 7 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 8 C 0.35 6.76 6.48 -29.04 -0.19 6.57 16 9 O -0.43 -10.33 16.21 -13.08 -0.21 -10.54 16 10 C -0.16 -3.14 5.58 -27.88 -0.16 -3.30 16 11 C 0.03 0.80 4.26 -27.88 -0.12 0.68 16 12 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 O -0.36 -5.86 10.30 -54.31 -0.56 -6.42 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 26 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 30 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -33.83 273.47 -7.00 -40.84 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -5.01 Total: -4.58 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.06 Total: -13.25 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.77 Total: -16.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.83 -7.00 -40.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.545 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds