Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99699 * 2 1 4 4 O 1.20826 * 120.00051 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99927 * 180.02562 * 3 2 1 6 6 C 1.53006 * 112.84689 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.46791 * 170.32950 * 6 5 3 8 8 C 1.52997 * 109.46937 * 290.32786 * 6 5 3 9 9 C 1.50697 * 109.47290 * 50.33435 * 6 5 3 10 10 H 1.08001 * 119.99939 * 359.97438 * 9 6 5 11 11 C 1.37871 * 120.00084 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00050 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 120.00112 * 179.97438 * 11 9 6 14 14 H 1.48494 * 109.47277 * 89.99409 * 13 11 9 15 15 H 1.48500 * 109.46905 * 209.99498 * 13 11 9 16 16 H 1.48499 * 109.47148 * 329.99269 * 13 11 9 17 17 C 1.53780 * 113.61245 * 311.19027 * 5 3 2 18 18 C 1.53948 * 87.01697 * 89.23258 * 17 5 3 19 19 C 1.53780 * 87.11633 * 25.36271 * 18 17 5 20 20 H 1.08996 * 109.47261 * 60.00826 * 1 2 3 21 21 H 1.09004 * 109.46702 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47311 * 299.99811 * 1 2 3 23 23 H 1.08995 * 109.47676 * 300.00442 * 8 6 5 24 24 H 1.09003 * 109.46780 * 60.00686 * 8 6 5 25 25 H 1.09002 * 109.46984 * 180.02562 * 8 6 5 26 26 H 0.97004 * 120.00096 * 180.02562 * 12 11 9 27 27 H 1.09000 * 113.61461 * 203.74858 * 17 5 3 28 28 H 1.08995 * 113.61894 * 334.65595 * 17 5 3 29 29 H 1.09005 * 113.54029 * 270.80899 * 18 17 5 30 30 H 1.09006 * 113.66851 * 139.93263 * 18 17 5 31 31 H 1.08994 * 113.61871 * 220.09800 * 19 18 17 32 32 H 1.09002 * 113.69172 * 89.19391 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0857 2.7142 -0.0011 7 1 5.1620 2.7120 0.1711 8 6 3.7869 3.3636 -1.3538 9 6 3.4036 3.4948 1.0926 10 1 2.6724 3.0128 1.7247 11 6 3.7122 4.8246 1.2858 12 7 4.6022 5.4117 0.5158 13 14 2.8661 5.7925 2.6411 14 1 3.6558 5.6838 3.8940 15 1 2.7655 7.2192 2.2416 16 1 1.5045 5.2440 2.8651 17 6 4.2304 0.3803 1.0593 18 6 4.2374 -0.7345 -0.0023 19 6 4.2297 0.3806 -1.0612 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 4.2802 2.7990 -2.1449 24 1 2.7106 3.3658 -1.5260 25 1 4.1573 4.3888 -1.3544 26 1 4.8196 6.3472 0.6519 27 1 5.2269 0.7133 1.3494 28 1 3.5890 0.1664 1.9142 29 1 3.3325 -1.3422 -0.0015 30 1 5.1494 -1.3316 -0.0038 31 1 3.5875 0.1670 -1.9156 32 1 5.2254 0.7145 -1.3530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076605124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = -69.001712 kcal Electronic energy + Delta-G solvation = -15102.166809 eV Core-core repulsion = 12642.735898 eV Total energy + Delta-G solvation = -2459.430910 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30943 -37.71860 -35.74111 -33.36253 -30.19746 -27.61671 -25.81027 -24.90597 -24.40011 -21.68091 -20.16578 -18.62075 -16.58453 -16.36678 -15.64068 -15.16677 -14.67823 -14.12452 -13.54159 -12.91218 -12.89373 -12.03786 -11.93073 -11.78217 -11.71265 -11.38789 -10.97640 -10.73275 -10.50267 -10.44878 -10.27684 -10.11095 -9.87657 -9.64150 -9.27339 -8.89613 -8.59509 -8.18651 -5.84427 -3.85075 3.07804 3.38620 3.39343 3.45665 3.52445 4.57265 5.16538 5.21211 5.30457 5.44896 5.47044 5.49275 5.58736 5.70187 5.95519 6.15706 6.31254 6.34468 6.49483 6.54583 6.66742 6.88771 6.99860 7.12672 7.26101 7.39833 7.81773 8.04663 8.22838 8.55199 8.70062 9.11257 9.75709 11.22371 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032051 B = 0.012212 C = 0.010489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.391925 B = 2292.238583 C = 2668.854202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.371 6.371 3 C 0.477 3.523 4 O -0.466 6.466 5 C -0.064 4.064 6 C 0.069 3.931 7 H 0.040 0.960 8 C -0.140 4.140 9 C -0.482 4.482 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.888 3.112 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.122 4.122 20 H 0.055 0.945 21 H 0.090 0.910 22 H 0.056 0.944 23 H 0.004 0.996 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.257 0.743 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 -11.220 -1.638 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.289 6.289 3 C 0.317 3.683 4 O -0.348 6.348 5 C -0.065 4.065 6 C 0.051 3.949 7 H 0.058 0.942 8 C -0.198 4.198 9 C -0.520 4.520 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.539 5.539 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.149 4.149 18 C -0.183 4.183 19 C -0.159 4.159 20 H 0.074 0.926 21 H 0.109 0.891 22 H 0.075 0.925 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.850 -10.715 -1.661 11.211 hybrid contribution -0.810 0.770 0.733 1.337 sum -3.660 -9.945 -0.927 10.637 Atomic orbital electron populations 1.23071 0.78374 1.02408 1.02068 1.86542 1.21810 1.35210 1.85350 1.23354 0.91359 0.80602 0.72939 1.90685 1.66287 1.35691 1.42169 1.21926 0.85898 1.00593 0.98088 1.18595 0.96029 0.85431 0.94831 0.94216 1.21834 0.99209 1.03195 0.95543 1.21035 1.21694 0.95117 1.14187 0.92910 1.24860 0.95340 0.97669 0.96334 1.69878 1.33457 1.11700 1.38833 0.86649 0.80112 0.79298 0.82285 1.20994 1.21433 1.20105 1.22824 1.01193 0.94740 0.96112 1.23025 1.01687 0.96608 0.96937 1.22888 1.01051 0.95724 0.96275 0.92580 0.89124 0.92488 0.97666 0.94795 0.89812 0.93333 0.89092 0.91896 0.89631 0.91988 0.92067 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.58 8.66 -39.26 -0.34 -6.93 16 3 C 0.48 10.24 6.39 36.00 0.23 10.47 16 4 O -0.47 -11.66 12.71 -18.75 -0.24 -11.90 16 5 C -0.06 -1.33 0.54 -154.85 -0.08 -1.41 16 6 C 0.07 1.74 1.78 -91.77 -0.16 1.58 16 7 H 0.04 1.05 7.98 -51.93 -0.41 0.63 16 8 C -0.14 -3.54 8.63 37.16 0.32 -3.21 16 9 C -0.48 -13.62 6.97 -34.44 -0.24 -13.86 16 10 H 0.05 1.53 6.64 -52.49 -0.35 1.19 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 12 N -0.90 -26.41 11.32 55.43 0.63 -25.78 16 13 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 C -0.11 -1.98 7.16 -25.83 -0.18 -2.17 16 18 C -0.15 -2.18 7.63 -25.83 -0.20 -2.37 16 19 C -0.12 -2.07 6.28 -25.92 -0.16 -2.24 16 20 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 23 H 0.00 0.10 7.49 -51.93 -0.39 -0.29 16 24 H 0.03 0.88 6.65 -51.93 -0.35 0.53 16 25 H 0.08 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.09 1.60 7.99 -51.93 -0.41 1.18 16 28 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 29 H 0.09 1.25 6.84 -51.93 -0.36 0.89 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -31.19 259.61 -5.24 -36.43 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.67 Total: -3.18 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 0.49 Total: -10.10 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.63 Total: -25.78 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.58 Total: -18.82 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.19 -5.24 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076605124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.576 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds