Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99699 * 2 1 4 4 O 1.20826 * 120.00051 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99927 * 180.02562 * 3 2 1 6 6 C 1.53006 * 112.84689 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.46791 * 170.32950 * 6 5 3 8 8 C 1.52997 * 109.46937 * 290.32786 * 6 5 3 9 9 C 1.50697 * 109.47290 * 50.33435 * 6 5 3 10 10 H 1.08001 * 119.99939 * 359.97438 * 9 6 5 11 11 C 1.37871 * 120.00084 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00050 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 120.00112 * 179.97438 * 11 9 6 14 14 H 1.48494 * 109.47277 * 89.99409 * 13 11 9 15 15 H 1.48500 * 109.46905 * 209.99498 * 13 11 9 16 16 H 1.48499 * 109.47148 * 329.99269 * 13 11 9 17 17 C 1.53780 * 113.61245 * 311.19027 * 5 3 2 18 18 C 1.53948 * 87.01697 * 89.23258 * 17 5 3 19 19 C 1.53780 * 87.11633 * 25.36271 * 18 17 5 20 20 H 1.08996 * 109.47261 * 60.00826 * 1 2 3 21 21 H 1.09004 * 109.46702 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47311 * 299.99811 * 1 2 3 23 23 H 1.08995 * 109.47676 * 300.00442 * 8 6 5 24 24 H 1.09003 * 109.46780 * 60.00686 * 8 6 5 25 25 H 1.09002 * 109.46984 * 180.02562 * 8 6 5 26 26 H 0.97004 * 120.00096 * 180.02562 * 12 11 9 27 27 H 1.09000 * 113.61461 * 203.74858 * 17 5 3 28 28 H 1.08995 * 113.61894 * 334.65595 * 17 5 3 29 29 H 1.09005 * 113.54029 * 270.80899 * 18 17 5 30 30 H 1.09006 * 113.66851 * 139.93263 * 18 17 5 31 31 H 1.08994 * 113.61871 * 220.09800 * 19 18 17 32 32 H 1.09002 * 113.69172 * 89.19391 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0857 2.7142 -0.0011 7 1 5.1620 2.7120 0.1711 8 6 3.7869 3.3636 -1.3538 9 6 3.4036 3.4948 1.0926 10 1 2.6724 3.0128 1.7247 11 6 3.7122 4.8246 1.2858 12 7 4.6022 5.4117 0.5158 13 14 2.8661 5.7925 2.6411 14 1 3.6558 5.6838 3.8940 15 1 2.7655 7.2192 2.2416 16 1 1.5045 5.2440 2.8651 17 6 4.2304 0.3803 1.0593 18 6 4.2374 -0.7345 -0.0023 19 6 4.2297 0.3806 -1.0612 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 4.2802 2.7990 -2.1449 24 1 2.7106 3.3658 -1.5260 25 1 4.1573 4.3888 -1.3544 26 1 4.8196 6.3472 0.6519 27 1 5.2269 0.7133 1.3494 28 1 3.5890 0.1664 1.9142 29 1 3.3325 -1.3422 -0.0015 30 1 5.1494 -1.3316 -0.0038 31 1 3.5875 0.1670 -1.9156 32 1 5.2254 0.7145 -1.3530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076605124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = -87.500520 kcal Electronic energy + Delta-G solvation = -15102.968977 eV Core-core repulsion = 12642.735898 eV Total energy + Delta-G solvation = -2460.233079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.88341 -39.20751 -37.36002 -35.39285 -32.20668 -28.90703 -27.60524 -26.50903 -26.10936 -23.31667 -21.82589 -20.19513 -18.43756 -18.08231 -17.14264 -16.82345 -16.59112 -15.53316 -15.12177 -14.75769 -14.41803 -13.78771 -13.65630 -13.29613 -13.11285 -12.99993 -12.91647 -12.69390 -12.39657 -12.15791 -11.96187 -11.70689 -11.56639 -11.30120 -10.96351 -10.65545 -10.51536 -10.34813 -8.03024 -6.08613 1.35458 1.37641 1.44386 1.47883 1.94676 2.45903 3.25335 3.73876 3.86304 3.93302 4.10653 4.36390 4.38510 4.46274 4.72313 4.82460 4.90967 4.96410 4.98114 5.08749 5.17967 5.20078 5.31408 5.38768 5.49950 5.65286 5.68177 5.98181 6.10718 6.43919 6.92966 7.09225 7.53988 9.02192 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032051 B = 0.012212 C = 0.010489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.391925 B = 2292.238583 C = 2668.854202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.480 3.520 4 O -0.514 6.514 5 C -0.086 4.086 6 C 0.068 3.932 7 H 0.023 0.977 8 C -0.128 4.128 9 C -0.488 4.488 10 H 0.037 0.963 11 C 0.007 3.993 12 N -0.921 5.921 13 Si 0.941 3.059 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.115 4.115 20 H 0.054 0.946 21 H 0.138 0.862 22 H 0.048 0.952 23 H 0.033 0.967 24 H 0.016 0.984 25 H 0.053 0.947 26 H 0.257 0.743 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -13.290 -1.608 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.323 3.677 4 O -0.401 6.401 5 C -0.087 4.087 6 C 0.049 3.951 7 H 0.041 0.959 8 C -0.186 4.186 9 C -0.526 4.526 10 H 0.055 0.945 11 C -0.189 4.189 12 N -0.563 5.563 13 Si 0.768 3.232 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.152 4.152 20 H 0.073 0.927 21 H 0.156 0.844 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.910 -12.819 -1.626 13.245 hybrid contribution -0.856 1.370 0.710 1.765 sum -3.766 -11.448 -0.916 12.087 Atomic orbital electron populations 1.23450 0.76082 1.05385 1.01671 1.86502 1.23920 1.32875 1.84490 1.23468 0.91679 0.80892 0.71656 1.90664 1.67310 1.37413 1.44693 1.21946 0.86203 0.98649 1.01943 1.18478 0.94827 0.88235 0.93538 0.95872 1.21653 0.98076 1.01947 0.96920 1.21266 1.21076 0.95588 1.14717 0.94453 1.25545 0.96201 0.98754 0.98423 1.69986 1.34487 1.11836 1.39985 0.85819 0.78800 0.78073 0.80520 1.19624 1.20993 1.20912 1.22861 1.00627 0.95344 0.96168 1.22903 1.03649 0.95523 0.93575 1.22906 1.00949 0.95227 0.96152 0.92732 0.84380 0.93289 0.94790 0.96444 0.92791 0.93380 0.89172 0.92194 0.88765 0.88851 0.91224 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.36 -12.03 8.66 -51.42 -0.45 -12.48 16 3 C 0.48 20.31 6.39 71.24 0.46 20.77 16 4 O -0.51 -26.12 12.71 21.96 0.28 -25.84 16 5 C -0.09 -3.50 0.54 -52.40 -0.03 -3.53 16 6 C 0.07 3.42 1.78 -11.54 -0.02 3.40 16 7 H 0.02 1.24 7.98 -2.38 -0.02 1.22 16 8 C -0.13 -6.55 8.63 71.98 0.62 -5.93 16 9 C -0.49 -28.11 6.97 25.60 0.18 -27.93 16 10 H 0.04 2.22 6.64 -2.91 -0.02 2.20 16 11 C 0.01 0.44 5.30 84.65 0.45 0.89 16 12 N -0.92 -55.20 11.32 21.44 0.24 -54.96 16 13 Si 0.94 46.97 29.54 68.60 2.03 48.99 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 17 C -0.11 -3.81 7.16 31.18 0.22 -3.58 16 18 C -0.12 -3.12 7.63 31.18 0.24 -2.88 16 19 C -0.11 -3.59 6.28 31.12 0.20 -3.40 16 20 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 21 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 22 H 0.05 1.36 8.13 -2.39 -0.02 1.35 16 23 H 0.03 1.47 7.49 -2.39 -0.02 1.46 16 24 H 0.02 0.89 6.65 -2.39 -0.02 0.88 16 25 H 0.05 3.06 6.07 -2.39 -0.01 3.04 16 26 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 27 H 0.09 3.04 7.99 -2.39 -0.02 3.02 16 28 H 0.06 2.03 8.09 -2.39 -0.02 2.01 16 29 H 0.09 2.34 6.84 -2.38 -0.02 2.32 16 30 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 32 H 0.10 2.87 8.10 -2.39 -0.02 2.85 16 Total: -1.00 -68.31 259.61 6.70 -61.61 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.09 Total: 2.95 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 3.51 Total: -20.28 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.24 Total: -54.96 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.17 Total: -38.31 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -68.31 6.70 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076605124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.895 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds