Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.73983 * 320.00295 * 12 10 9 14 14 C 1.50812 * 109.74395 * 80.68162 * 12 10 9 15 15 C 1.53758 * 111.65667 * 214.65032 * 14 12 10 16 16 C 1.54163 * 111.99194 * 319.11781 * 15 14 12 17 17 C 1.50755 * 112.60778 * 318.44181 * 16 15 14 18 18 C 1.54436 * 109.02012 * 93.01919 * 17 16 15 19 19 N 1.39778 * 111.77280 * 282.59378 * 18 17 16 20 20 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 22 22 H 1.08994 * 109.05447 * 335.24496 * 14 12 10 23 23 H 1.09001 * 109.04700 * 94.14745 * 14 12 10 24 24 H 1.08997 * 109.00130 * 198.44265 * 15 14 12 25 25 H 1.09005 * 108.93678 * 79.74620 * 15 14 12 26 26 H 1.09000 * 108.85397 * 197.63714 * 16 15 14 27 27 H 1.08996 * 108.86011 * 79.25091 * 16 15 14 28 28 H 1.08997 * 109.54880 * 333.15867 * 17 16 15 29 29 H 1.09002 * 109.54582 * 212.88116 * 17 16 15 30 30 H 1.09005 * 109.01726 * 162.00508 * 18 17 16 31 31 H 1.09002 * 109.02132 * 43.18608 * 18 17 16 32 32 H 1.00901 * 110.99941 * 295.42185 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.3794 -4.7887 0.6619 14 6 0.7895 -5.1896 -1.3983 15 6 -0.5731 -5.9019 -1.4012 16 6 -0.6821 -6.9441 -0.2705 17 6 0.5821 -7.7473 -0.0989 18 6 1.4669 -7.0707 0.9708 19 7 2.1302 -5.9504 0.4620 20 1 -0.4850 0.8401 0.0004 21 1 0.3534 -2.3906 0.0024 22 1 0.7095 -4.2657 -1.9710 23 1 1.5290 -5.8365 -1.8704 24 1 -0.7097 -6.4027 -2.3596 25 1 -1.3609 -5.1590 -1.2758 26 1 -1.5036 -7.6241 -0.4963 27 1 -0.9014 -6.4283 0.6643 28 1 1.1205 -7.7868 -1.0457 29 1 0.3310 -8.7584 0.2219 30 1 2.2052 -7.7890 1.3274 31 1 0.8399 -6.7627 1.8076 32 1 2.7836 -6.2141 -0.2602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081018190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = -48.069539 kcal Electronic energy + Delta-G solvation = -14535.842720 eV Core-core repulsion = 12109.612249 eV Total energy + Delta-G solvation = -2426.230472 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.48693 -37.27310 -33.90409 -33.01754 -32.02458 -30.95429 -26.19471 -24.89352 -24.29039 -21.63236 -19.82060 -18.85897 -17.84909 -16.41236 -15.38966 -14.88001 -14.64374 -14.48325 -14.01893 -13.70342 -13.43682 -12.75752 -12.60154 -12.10225 -11.74201 -11.50421 -11.20625 -11.02294 -10.97248 -10.59202 -10.46584 -10.40131 -10.19189 -10.15050 -9.43470 -8.37644 -7.89905 -7.72988 -6.35942 -3.76559 3.23870 3.28881 3.33638 3.95959 4.18453 4.52434 4.81511 4.99776 5.05318 5.09542 5.24309 5.39820 5.45633 5.61906 5.67997 5.81188 5.90135 6.00958 6.09492 6.10037 6.25266 6.33316 6.36167 6.46099 6.52671 7.58911 7.60700 7.92904 8.13439 8.68926 9.24309 9.61904 10.14489 10.81866 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054001 B = 0.007648 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.389169 B = 3660.135131 C = 3965.958319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.452 3.548 11 O -0.582 6.582 12 C 0.093 3.907 13 H 0.088 0.912 14 C -0.140 4.140 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.166 4.166 18 C 0.080 3.920 19 N -0.678 5.678 20 H 0.271 0.729 21 H 0.391 0.609 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -11.581 -1.339 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.237 3.763 11 O -0.466 6.466 12 C -0.020 4.020 13 H 0.106 0.894 14 C -0.180 4.180 15 C -0.155 4.155 16 C -0.158 4.158 17 C -0.206 4.206 18 C -0.052 4.052 19 N -0.308 5.308 20 H 0.081 0.919 21 H 0.225 0.775 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.739 -11.134 -0.724 11.489 hybrid contribution -0.635 0.447 -0.846 1.148 sum -3.374 -10.687 -1.570 11.317 Atomic orbital electron populations 1.69608 1.05898 1.28130 1.50880 1.25239 0.95618 0.99618 0.97479 0.85934 0.78758 0.80574 0.79040 1.21022 1.19919 1.19973 1.19659 0.93332 0.82309 1.47516 0.88036 1.41841 1.09110 1.04489 1.64733 1.19769 0.88234 0.84467 0.83791 1.90496 1.13898 1.87141 1.55048 1.20981 0.94649 0.91285 0.95040 0.89401 1.22036 0.96996 1.01150 0.97809 1.21905 0.97489 0.97780 0.98292 1.21403 0.97591 0.97486 0.99291 1.22419 0.97850 0.99406 1.00963 1.20980 0.96539 0.91446 0.96255 1.56971 1.20486 1.09830 1.43500 0.91913 0.77541 0.90873 0.91917 0.92422 0.91718 0.92663 0.92037 0.91961 0.92114 0.91354 0.91684 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 10 C 0.45 11.01 6.79 -10.98 -0.07 10.94 16 11 O -0.58 -16.32 16.14 5.55 0.09 -16.23 16 12 C 0.09 1.71 2.52 -69.56 -0.18 1.53 16 13 H 0.09 1.55 6.67 -51.93 -0.35 1.21 16 14 C -0.14 -2.22 4.95 -27.43 -0.14 -2.35 16 15 C -0.12 -1.51 5.91 -25.73 -0.15 -1.66 16 16 C -0.12 -1.41 5.31 -27.25 -0.14 -1.55 16 17 C -0.17 -1.89 5.64 -27.10 -0.15 -2.04 16 18 C 0.08 1.05 5.99 -6.74 -0.04 1.01 16 19 N -0.68 -11.42 5.58 -112.67 -0.63 -12.05 16 20 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 21 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 22 H 0.07 1.29 7.71 -51.93 -0.40 0.88 16 23 H 0.06 0.94 6.78 -51.93 -0.35 0.59 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.76 6.58 -51.93 -0.34 0.42 16 28 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16 32 H 0.35 5.77 8.10 -39.29 -0.32 5.45 16 LS Contribution 257.80 15.07 3.88 3.88 Total: -1.00 -30.73 257.80 -6.59 -37.32 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.47 Total: 11.88 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.12 Total: -2.27 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.04 Total: -50.94 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.73 -6.59 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081018190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.745 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds