Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.73983 * 320.00295 * 12 10 9 14 14 C 1.50812 * 109.74395 * 80.68162 * 12 10 9 15 15 C 1.53758 * 111.65667 * 214.65032 * 14 12 10 16 16 C 1.54163 * 111.99194 * 319.11781 * 15 14 12 17 17 C 1.50755 * 112.60778 * 318.44181 * 16 15 14 18 18 C 1.54436 * 109.02012 * 93.01919 * 17 16 15 19 19 N 1.39778 * 111.77280 * 282.59378 * 18 17 16 20 20 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 22 22 H 1.08994 * 109.05447 * 335.24496 * 14 12 10 23 23 H 1.09001 * 109.04700 * 94.14745 * 14 12 10 24 24 H 1.08997 * 109.00130 * 198.44265 * 15 14 12 25 25 H 1.09005 * 108.93678 * 79.74620 * 15 14 12 26 26 H 1.09000 * 108.85397 * 197.63714 * 16 15 14 27 27 H 1.08996 * 108.86011 * 79.25091 * 16 15 14 28 28 H 1.08997 * 109.54880 * 333.15867 * 17 16 15 29 29 H 1.09002 * 109.54582 * 212.88116 * 17 16 15 30 30 H 1.09005 * 109.01726 * 162.00508 * 18 17 16 31 31 H 1.09002 * 109.02132 * 43.18608 * 18 17 16 32 32 H 1.00901 * 110.99941 * 295.42185 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.3794 -4.7887 0.6619 14 6 0.7895 -5.1896 -1.3983 15 6 -0.5731 -5.9019 -1.4012 16 6 -0.6821 -6.9441 -0.2705 17 6 0.5821 -7.7473 -0.0989 18 6 1.4669 -7.0707 0.9708 19 7 2.1302 -5.9504 0.4620 20 1 -0.4850 0.8401 0.0004 21 1 0.3534 -2.3906 0.0024 22 1 0.7095 -4.2657 -1.9710 23 1 1.5290 -5.8365 -1.8704 24 1 -0.7097 -6.4027 -2.3596 25 1 -1.3609 -5.1590 -1.2758 26 1 -1.5036 -7.6241 -0.4963 27 1 -0.9014 -6.4283 0.6643 28 1 1.1205 -7.7868 -1.0457 29 1 0.3310 -8.7584 0.2219 30 1 2.2052 -7.7890 1.3274 31 1 0.8399 -6.7627 1.8076 32 1 2.7836 -6.2141 -0.2602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081018190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -70.697894 kcal Electronic energy + Delta-G solvation = -14536.823960 eV Core-core repulsion = 12109.612249 eV Total energy + Delta-G solvation = -2427.211711 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96999 -38.96876 -35.95621 -34.20588 -33.52320 -32.79359 -27.84229 -26.10534 -25.91527 -22.92777 -21.32374 -20.30913 -19.84794 -18.08768 -16.97654 -16.39234 -16.03417 -15.81579 -15.44255 -15.36373 -15.20591 -14.23257 -13.92299 -13.50546 -13.24414 -13.12148 -12.85055 -12.53536 -12.42397 -12.17176 -12.09371 -11.60325 -11.51207 -11.47379 -11.26438 -10.25441 -10.00274 -9.08086 -8.45413 -5.94816 1.40156 1.41319 1.52698 2.06445 2.29789 3.00239 3.19254 3.53541 3.81238 3.97489 4.03470 4.14354 4.28379 4.38819 4.46132 4.62480 4.70982 4.83681 4.98081 5.00653 5.12146 5.23587 5.30046 5.34370 5.41069 5.48500 5.97164 6.31705 6.60931 6.72626 7.13451 7.57479 8.13486 8.71674 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054001 B = 0.007648 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.389169 B = 3660.135131 C = 3965.958319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.446 3.554 11 O -0.624 6.624 12 C 0.108 3.892 13 H 0.096 0.904 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.075 3.925 19 N -0.693 5.693 20 H 0.278 0.722 21 H 0.395 0.605 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 -12.494 -1.469 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.233 3.767 11 O -0.511 6.511 12 C -0.005 4.005 13 H 0.114 0.886 14 C -0.173 4.173 15 C -0.149 4.149 16 C -0.158 4.158 17 C -0.197 4.197 18 C -0.056 4.056 19 N -0.324 5.324 20 H 0.087 0.913 21 H 0.228 0.772 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.690 -12.073 -0.851 12.653 hybrid contribution -0.335 0.692 -0.787 1.100 sum -4.025 -11.382 -1.638 12.183 Atomic orbital electron populations 1.69672 1.06832 1.29348 1.50304 1.26046 0.96563 1.02378 0.96229 0.84989 0.77780 0.76602 0.78958 1.19333 1.19754 1.19647 1.19654 0.92712 0.84116 1.50151 0.90396 1.41908 1.09169 1.04646 1.65200 1.20909 0.88136 0.86020 0.81631 1.90454 1.15995 1.88065 1.56545 1.20754 0.93959 0.88744 0.97034 0.88610 1.21958 0.99222 1.00604 0.95528 1.21877 0.95049 0.98013 0.99992 1.21421 0.98603 0.97437 0.98294 1.22308 0.97036 1.00249 1.00104 1.21090 0.97237 0.90569 0.96654 1.56931 1.20970 1.10861 1.43666 0.91278 0.77182 0.93262 0.91146 0.90586 0.91957 0.90452 0.92754 0.91992 0.89752 0.89750 0.91934 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.61 13.05 21.66 0.28 -50.32 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.34 -19.72 9.68 84.04 0.81 -18.91 16 8 H 0.08 4.85 7.16 -2.92 -0.02 4.82 16 9 N -0.57 -30.58 5.29 -306.98 -1.62 -32.20 16 10 C 0.45 22.31 6.79 87.66 0.60 22.91 16 11 O -0.62 -36.19 16.14 -3.05 -0.05 -36.24 16 12 C 0.11 3.93 2.52 43.32 0.11 4.04 16 13 H 0.10 3.34 6.67 -2.39 -0.02 3.33 16 14 C -0.13 -4.12 4.95 30.14 0.15 -3.97 16 15 C -0.11 -2.64 5.91 31.24 0.18 -2.45 16 16 C -0.12 -2.44 5.31 30.26 0.16 -2.28 16 17 C -0.16 -3.06 5.64 30.35 0.17 -2.89 16 18 C 0.08 1.83 5.99 88.07 0.53 2.36 16 19 N -0.69 -22.85 5.58 -510.38 -2.85 -25.69 16 20 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 21 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 22 H 0.05 1.75 7.71 -2.39 -0.02 1.73 16 23 H 0.07 2.05 6.78 -2.39 -0.02 2.03 16 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.20 6.58 -2.39 -0.02 1.18 16 28 H 0.06 1.25 7.11 -2.39 -0.02 1.23 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.06 1.56 7.54 -2.39 -0.02 1.54 16 32 H 0.35 11.33 8.10 -89.69 -0.73 10.60 16 Total: -1.00 -66.66 257.80 0.64 -66.02 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.33 Total: 34.11 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 3.18 Total: -1.41 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.19 Total: -108.22 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.05 Total: -36.24 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.66 0.64 -66.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081018190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.681 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds