Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.00679 * 41.08648 * 12 10 9 14 14 C 1.54438 * 109.01951 * 282.25335 * 12 10 9 15 15 C 1.50748 * 109.03106 * 162.01997 * 14 12 10 16 16 C 1.54175 * 112.61271 * 93.01103 * 15 14 12 17 17 C 1.53815 * 111.96980 * 318.48253 * 16 15 14 18 18 C 1.50818 * 111.62221 * 319.04659 * 17 16 15 19 19 N 1.39782 * 109.01969 * 160.00141 * 12 10 9 20 20 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 22 22 H 1.09002 * 109.54151 * 281.88268 * 14 12 10 23 23 H 1.08997 * 109.54707 * 42.15338 * 14 12 10 24 24 H 1.08997 * 108.85576 * 332.20166 * 15 14 12 25 25 H 1.09002 * 108.77529 * 213.75796 * 15 14 12 26 26 H 1.09005 * 108.98300 * 197.84415 * 16 15 14 27 27 H 1.08994 * 108.98466 * 79.12525 * 16 15 14 28 28 H 1.09003 * 109.05548 * 198.49458 * 17 16 15 29 29 H 1.08999 * 108.99250 * 79.55799 * 17 16 15 30 30 H 1.09004 * 109.74764 * 335.42627 * 18 17 16 31 31 H 1.08996 * 109.78839 * 214.72261 * 18 17 16 32 32 H 1.00906 * 110.99352 * 309.71554 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 1 0.3937 -4.7854 -0.6587 14 6 0.7230 -5.1366 1.4473 15 6 -0.3743 -6.1681 1.3812 16 6 0.1491 -7.6042 1.5823 17 6 1.4710 -7.8450 0.8336 18 6 1.4586 -7.2101 -0.5343 19 7 2.0915 -5.8807 -0.4271 20 1 -0.4850 0.8401 -0.0004 21 1 0.3533 -2.3906 0.0068 22 1 1.5380 -5.5105 2.0671 23 1 0.3310 -4.2141 1.8756 24 1 -0.8604 -6.1034 0.4077 25 1 -1.1088 -5.9492 2.1563 26 1 -0.5985 -8.3085 1.2171 27 1 0.3077 -7.7781 2.6465 28 1 1.6289 -8.9182 0.7263 29 1 2.2901 -7.4216 1.4149 30 1 0.4308 -7.1018 -0.8808 31 1 2.0196 -7.8297 -1.2339 32 1 2.5406 -5.6231 -1.2932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081018199.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = -45.724275 kcal Electronic energy + Delta-G solvation = -14488.814611 eV Core-core repulsion = 12062.685837 eV Total energy + Delta-G solvation = -2426.128773 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38621 -37.17311 -34.00301 -33.00745 -31.99343 -30.96761 -26.05353 -25.42418 -24.22585 -21.14745 -19.18107 -19.12310 -17.92470 -16.55752 -15.81972 -14.77061 -14.51899 -14.40571 -14.03353 -13.63217 -13.30723 -12.91474 -12.63310 -11.89155 -11.72985 -11.56092 -11.19162 -11.09797 -10.65427 -10.52704 -10.34130 -10.30653 -10.20091 -10.10845 -9.49056 -8.29976 -7.93760 -7.82266 -6.39584 -3.80235 3.17642 3.28074 3.35645 3.92185 4.15320 4.46388 4.94754 4.99599 5.11215 5.19766 5.27177 5.39965 5.52515 5.69196 5.74820 5.85425 5.95282 6.05343 6.12167 6.24675 6.32366 6.37549 6.45333 6.56309 6.72380 7.57340 7.68428 7.84633 8.11921 8.65119 9.20687 9.58116 10.10074 10.78223 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059611 B = 0.007320 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.601607 B = 3823.984975 C = 4096.093245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.580 6.580 12 C 0.105 3.895 13 H 0.028 0.972 14 C -0.107 4.107 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.120 4.120 18 C 0.071 3.929 19 N -0.682 5.682 20 H 0.271 0.729 21 H 0.392 0.608 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -11.639 0.708 12.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.010 4.010 13 H 0.046 0.954 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.058 4.058 19 N -0.316 5.316 20 H 0.080 0.920 21 H 0.225 0.775 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.033 -11.577 1.314 11.827 hybrid contribution -0.816 1.041 -0.753 1.522 sum -2.849 -10.536 0.561 10.929 Atomic orbital electron populations 1.69629 1.05937 1.27996 1.50777 1.25261 0.95628 0.99701 0.97390 0.85806 0.79728 0.81168 0.77686 1.19216 1.20782 1.20754 1.19771 0.93404 0.82285 1.47379 0.87892 1.41910 1.09189 1.04591 1.64267 1.19956 0.88335 0.84697 0.84445 1.90521 1.13715 1.87014 1.55109 1.20132 0.93458 0.90992 0.96465 0.95418 1.21449 0.98340 0.98944 0.95854 1.21432 0.98158 0.94466 1.01661 1.21913 0.97037 0.96320 1.00085 1.21468 0.98313 0.99347 0.96727 1.21601 0.97276 0.89900 0.97011 1.56827 1.35428 1.01806 1.37532 0.91959 0.77492 0.90549 0.91034 0.92468 0.92250 0.92785 0.92453 0.92530 0.90397 0.94587 0.91355 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.61 5.29 -10.96 -0.06 -14.66 16 10 C 0.44 10.74 6.76 -10.98 -0.07 10.66 16 11 O -0.58 -16.23 15.96 5.55 0.09 -16.14 16 12 C 0.10 1.97 2.41 -71.78 -0.17 1.80 16 13 H 0.03 0.51 7.54 -51.93 -0.39 0.12 16 14 C -0.11 -1.81 4.99 -27.11 -0.14 -1.95 16 15 C -0.12 -1.61 5.31 -27.25 -0.14 -1.75 16 16 C -0.12 -1.36 5.91 -25.69 -0.15 -1.51 16 17 C -0.12 -1.50 5.41 -27.40 -0.15 -1.64 16 18 C 0.07 0.94 6.22 -4.52 -0.03 0.91 16 19 N -0.68 -11.73 5.34 -112.44 -0.60 -12.33 16 20 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 21 H 0.39 9.80 7.90 -40.82 -0.32 9.47 16 22 H 0.08 1.35 7.11 -51.93 -0.37 0.98 16 23 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 24 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.13 7.26 -51.93 -0.38 0.75 16 30 H 0.04 0.46 6.66 -51.93 -0.35 0.12 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.35 6.16 8.45 -39.29 -0.33 5.83 16 LS Contribution 258.38 15.07 3.89 3.89 Total: -1.00 -30.61 258.38 -6.59 -37.20 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.52 Total: 11.50 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.10 Total: -1.61 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.07 Total: -51.09 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.61 -6.59 -37.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081018199.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.522 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds