Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.00679 * 41.08648 * 12 10 9 14 14 C 1.54438 * 109.01951 * 282.25335 * 12 10 9 15 15 C 1.50748 * 109.03106 * 162.01997 * 14 12 10 16 16 C 1.54175 * 112.61271 * 93.01103 * 15 14 12 17 17 C 1.53815 * 111.96980 * 318.48253 * 16 15 14 18 18 C 1.50818 * 111.62221 * 319.04659 * 17 16 15 19 19 N 1.39782 * 109.01969 * 160.00141 * 12 10 9 20 20 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 22 22 H 1.09002 * 109.54151 * 281.88268 * 14 12 10 23 23 H 1.08997 * 109.54707 * 42.15338 * 14 12 10 24 24 H 1.08997 * 108.85576 * 332.20166 * 15 14 12 25 25 H 1.09002 * 108.77529 * 213.75796 * 15 14 12 26 26 H 1.09005 * 108.98300 * 197.84415 * 16 15 14 27 27 H 1.08994 * 108.98466 * 79.12525 * 16 15 14 28 28 H 1.09003 * 109.05548 * 198.49458 * 17 16 15 29 29 H 1.08999 * 108.99250 * 79.55799 * 17 16 15 30 30 H 1.09004 * 109.74764 * 335.42627 * 18 17 16 31 31 H 1.08996 * 109.78839 * 214.72261 * 18 17 16 32 32 H 1.00906 * 110.99352 * 309.71554 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 1 0.3937 -4.7854 -0.6587 14 6 0.7230 -5.1366 1.4473 15 6 -0.3743 -6.1681 1.3812 16 6 0.1491 -7.6042 1.5823 17 6 1.4710 -7.8450 0.8336 18 6 1.4586 -7.2101 -0.5343 19 7 2.0915 -5.8807 -0.4271 20 1 -0.4850 0.8401 -0.0004 21 1 0.3533 -2.3906 0.0068 22 1 1.5380 -5.5105 2.0671 23 1 0.3310 -4.2141 1.8756 24 1 -0.8604 -6.1034 0.4077 25 1 -1.1088 -5.9492 2.1563 26 1 -0.5985 -8.3085 1.2171 27 1 0.3077 -7.7781 2.6465 28 1 1.6289 -8.9182 0.7263 29 1 2.2901 -7.4216 1.4149 30 1 0.4308 -7.1018 -0.8808 31 1 2.0196 -7.8297 -1.2339 32 1 2.5406 -5.6231 -1.2932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081018199.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = -68.190221 kcal Electronic energy + Delta-G solvation = -14489.788807 eV Core-core repulsion = 12062.685837 eV Total energy + Delta-G solvation = -2427.102970 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.97306 -38.81155 -36.02287 -34.29855 -33.56195 -32.75443 -27.76874 -26.58032 -25.88237 -22.59570 -20.90370 -20.21981 -19.95609 -18.19941 -17.43934 -16.50543 -16.07143 -15.77597 -15.46174 -15.22962 -14.80061 -14.54225 -14.05335 -13.52595 -13.20790 -12.99099 -12.92788 -12.52949 -12.40720 -12.12401 -11.87941 -11.58641 -11.52537 -11.40648 -11.17159 -10.22550 -10.03468 -9.20350 -8.48729 -5.98156 1.35300 1.40647 1.55370 2.00519 2.27915 2.95291 3.17043 3.44296 3.89815 3.98879 4.09505 4.19691 4.27885 4.39243 4.49382 4.68631 4.72000 4.89691 4.96181 5.04726 5.17918 5.30084 5.32456 5.38943 5.45690 5.58757 5.93780 6.40435 6.47168 6.61093 7.10250 7.53434 8.08625 8.68893 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059611 B = 0.007320 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.601607 B = 3823.984975 C = 4096.093245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.570 5.570 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.121 3.879 13 H 0.039 0.961 14 C -0.102 4.102 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.120 4.120 18 C 0.071 3.929 19 N -0.698 5.698 20 H 0.278 0.722 21 H 0.395 0.605 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -12.536 0.689 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.206 5.206 10 C 0.223 3.777 11 O -0.508 6.508 12 C 0.005 3.995 13 H 0.056 0.944 14 C -0.140 4.140 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.057 4.057 19 N -0.332 5.332 20 H 0.088 0.912 21 H 0.228 0.772 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.131 -12.499 1.299 12.950 hybrid contribution -0.475 1.286 -0.751 1.563 sum -3.606 -11.212 0.548 11.791 Atomic orbital electron populations 1.69687 1.06881 1.29318 1.50180 1.26072 0.96565 1.02464 0.96105 0.84848 0.77987 0.76916 0.78434 1.19820 1.19413 1.19480 1.19732 0.92709 0.84048 1.50080 0.90363 1.41967 1.09224 1.04734 1.64708 1.21028 0.88207 0.86153 0.82348 1.90480 1.15805 1.87919 1.56583 1.19998 0.92929 0.88405 0.98119 0.94369 1.21405 0.99142 0.99497 0.94006 1.21399 0.96948 0.94538 1.02472 1.21912 0.97155 0.95330 1.00617 1.21467 0.97878 1.00698 0.95748 1.21773 0.97889 0.87724 0.98264 1.56860 1.35940 1.02964 1.37406 0.91215 0.77156 0.91707 0.92644 0.92011 0.90886 0.90360 0.91813 0.89882 0.92923 0.93520 0.89280 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 2 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 3 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.34 -19.61 9.68 84.04 0.81 -18.80 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -30.43 5.29 -306.98 -1.62 -32.05 16 10 C 0.44 21.86 6.76 87.66 0.59 22.45 16 11 O -0.62 -36.14 15.96 -3.07 -0.05 -36.19 16 12 C 0.12 4.54 2.41 45.94 0.11 4.65 16 13 H 0.04 1.37 7.54 -2.39 -0.02 1.35 16 14 C -0.10 -3.39 4.99 30.35 0.15 -3.24 16 15 C -0.12 -2.85 5.31 30.26 0.16 -2.69 16 16 C -0.11 -2.28 5.91 31.27 0.18 -2.09 16 17 C -0.12 -2.66 5.41 30.16 0.16 -2.50 16 18 C 0.07 1.70 6.22 85.45 0.53 2.24 16 19 N -0.70 -23.64 5.34 -509.65 -2.72 -26.36 16 20 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 21 H 0.39 20.19 7.90 -92.71 -0.73 19.46 16 22 H 0.06 2.29 7.11 -2.39 -0.02 2.27 16 23 H 0.05 2.00 8.01 -2.39 -0.02 1.98 16 24 H 0.06 1.48 6.57 -2.39 -0.02 1.46 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.45 7.26 -2.39 -0.02 1.44 16 30 H 0.05 1.05 6.66 -2.38 -0.02 1.04 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.34 12.15 8.45 -89.69 -0.76 11.39 16 Total: -1.00 -66.67 258.38 0.73 -65.94 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.36 Total: 33.41 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 3.18 Total: -0.19 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.06 Total: -108.51 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.05 Total: -36.19 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.67 0.73 -65.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081018199.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.255 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds