Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46669 * 2 1 4 4 C 1.50693 * 109.47132 * 119.99802 * 2 1 3 5 5 H 1.08001 * 120.00142 * 114.37269 * 4 2 1 6 6 C 1.37878 * 120.00132 * 294.37335 * 4 2 1 7 7 N 1.31514 * 120.00128 * 157.06889 * 6 4 2 8 8 Si 1.86803 * 120.00007 * 337.06945 * 6 4 2 9 9 H 1.48497 * 109.47254 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47016 * 300.00251 * 8 6 4 11 11 H 1.48498 * 109.47300 * 59.99800 * 8 6 4 12 12 C 1.50697 * 109.47075 * 240.00127 * 2 1 3 13 13 O 1.20764 * 119.99915 * 269.99581 * 12 2 1 14 14 C 1.50700 * 120.00433 * 90.00242 * 12 2 1 15 15 H 1.09002 * 109.51519 * 329.99513 * 14 12 2 16 16 C 1.53180 * 109.52196 * 209.87484 * 14 12 2 17 17 C 1.53184 * 109.03224 * 183.17315 * 16 14 12 18 18 C 1.53096 * 109.21404 * 56.87917 * 17 16 14 19 19 O 1.42898 * 109.41709 * 302.43096 * 18 17 16 20 20 C 1.42899 * 114.10323 * 61.15363 * 19 18 17 21 21 H 1.09001 * 109.47164 * 173.16783 * 1 2 3 22 22 H 1.08994 * 109.47265 * 293.16755 * 1 2 3 23 23 H 1.09002 * 109.47128 * 53.17506 * 1 2 3 24 24 H 0.96993 * 120.00140 * 354.92757 * 7 6 4 25 25 H 1.09003 * 109.53976 * 302.97501 * 16 14 12 26 26 H 1.08997 * 109.54777 * 63.24397 * 16 14 12 27 27 H 1.09004 * 109.47106 * 296.98294 * 17 16 14 28 28 H 1.08992 * 109.58170 * 176.85358 * 17 16 14 29 29 H 1.09002 * 109.48178 * 182.44337 * 18 17 16 30 30 H 1.09004 * 109.47687 * 62.40727 * 18 17 16 31 31 H 1.08998 * 109.48370 * 178.86255 * 20 19 18 32 32 H 1.08999 * 109.48690 * 58.82795 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8114 -0.9522 3.5405 8 14 1.4598 1.6524 2.6642 9 1 1.2418 1.9731 4.0977 10 1 2.6222 2.4244 2.1560 11 1 0.2477 2.0131 1.8859 12 6 2.0323 -0.7104 -1.2305 13 8 2.2337 -1.9007 -1.2005 14 6 2.2836 0.0646 -2.4983 15 1 1.6031 0.9148 -2.5463 16 6 2.0522 -0.8452 -3.7087 17 6 2.3870 -0.0705 -4.9871 18 6 3.8296 0.4358 -4.9062 19 8 3.9827 1.2503 -3.7421 20 6 3.7301 0.5656 -2.5135 21 1 -0.3633 -1.0204 -0.1223 22 1 -0.3633 0.4043 0.9447 23 1 -0.3633 0.6160 -0.8226 24 1 1.9133 -1.9114 3.4382 25 1 2.6968 -1.7211 -3.6349 26 1 1.0089 -1.1596 -3.7345 27 1 1.7087 0.7770 -5.0866 28 1 2.2791 -0.7266 -5.8507 29 1 4.0586 1.0245 -5.7946 30 1 4.5101 -0.4137 -4.8475 31 1 3.8873 1.2479 -1.6782 32 1 4.4093 -0.2821 -2.4234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082580577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -105.383629 kcal Electronic energy + Delta-G solvation = -14589.659323 eV Core-core repulsion = 12128.650775 eV Total energy + Delta-G solvation = -2461.008548 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80508 -37.99593 -33.83633 -33.44497 -31.58936 -30.74383 -25.29545 -24.76714 -24.50052 -22.21692 -20.06596 -18.41825 -17.41767 -16.22516 -16.08199 -15.35521 -14.80033 -14.43726 -13.89197 -13.31716 -13.27949 -13.09031 -12.62023 -12.39794 -11.82035 -11.75949 -11.41783 -11.09525 -10.94792 -10.88399 -10.53578 -10.28441 -10.14675 -9.86174 -9.49829 -9.00106 -8.52565 -8.18489 -6.49906 -4.08667 2.81439 3.36322 3.40865 3.58403 3.89555 4.47845 4.66077 4.82997 4.89028 5.05659 5.14544 5.19114 5.31850 5.47603 5.65737 5.77149 5.81185 5.91532 5.98404 6.18093 6.23379 6.24538 6.36772 6.52892 6.55802 6.96894 7.20078 7.21811 7.91984 8.38116 8.50075 8.92549 9.57400 10.87871 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.008771 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.230336 B = 3191.727240 C = 3377.591299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 H 0.041 0.959 4 C -0.602 4.602 5 H 0.067 0.933 6 C 0.038 3.962 7 N -0.895 5.895 8 Si 1.035 2.965 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.378 3.622 13 O -0.456 6.456 14 C -0.179 4.179 15 H 0.099 0.901 16 C -0.111 4.111 17 C -0.154 4.154 18 C 0.058 3.942 19 O -0.380 6.380 20 C 0.077 3.923 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.027 0.973 24 H 0.271 0.729 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 4.820 -14.840 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 H 0.059 0.941 4 C -0.640 4.640 5 H 0.085 0.915 6 C -0.169 4.169 7 N -0.528 5.528 8 Si 0.862 3.138 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.253 3.747 13 O -0.328 6.328 14 C -0.198 4.198 15 H 0.117 0.883 16 C -0.149 4.149 17 C -0.192 4.192 18 C -0.019 4.019 19 O -0.299 6.299 20 C 0.000 4.000 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.473 5.540 -13.689 14.775 hybrid contribution 0.083 -1.449 -1.126 1.837 sum 0.556 4.091 -14.815 15.379 Atomic orbital electron populations 1.22019 0.96630 1.00346 1.00378 1.19503 0.93954 0.97173 0.93790 0.94098 1.21840 1.41081 1.10936 0.90106 0.91528 1.25733 0.93345 1.05763 0.92010 1.70824 1.43528 1.06580 1.31852 0.84173 0.77282 0.75981 0.76353 1.20939 1.20755 1.20192 1.24713 0.71958 0.88927 0.89124 1.90245 1.39487 1.18014 1.85092 1.22541 1.00036 1.00809 0.96432 0.88296 1.21492 1.02481 0.98120 0.92761 1.22189 0.97967 1.00725 0.98294 1.22583 0.95496 0.95172 0.88645 1.87930 1.89957 1.37943 1.14025 1.22411 0.92997 0.97720 0.86866 0.93501 0.92001 0.95349 0.91923 0.90960 0.91426 0.91050 0.90942 0.89061 0.93255 0.87714 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.90 37.16 0.33 -2.59 16 2 C -0.02 -0.57 2.16 -92.93 -0.20 -0.77 16 3 H 0.04 0.90 6.70 -51.93 -0.35 0.56 16 4 C -0.60 -17.13 8.57 -34.44 -0.30 -17.43 16 5 H 0.07 2.12 7.33 -52.49 -0.38 1.74 16 6 C 0.04 1.08 5.20 -17.82 -0.09 0.99 16 7 N -0.90 -27.47 13.70 55.43 0.76 -26.71 16 8 Si 1.03 24.37 26.44 -169.99 -4.49 19.87 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -5.93 6.13 56.52 0.35 -5.58 16 12 C 0.38 8.08 5.27 -29.04 -0.15 7.93 16 13 O -0.46 -11.17 15.69 6.00 0.09 -11.07 16 14 C -0.18 -2.95 2.65 -91.63 -0.24 -3.20 16 15 H 0.10 1.51 8.12 -51.93 -0.42 1.09 16 16 C -0.11 -1.61 4.97 -26.54 -0.13 -1.74 16 17 C -0.15 -1.76 6.13 -26.59 -0.16 -1.92 16 18 C 0.06 0.68 6.84 37.21 0.25 0.93 16 19 O -0.38 -5.60 10.76 -35.23 -0.38 -5.98 16 20 C 0.08 1.21 6.11 37.20 0.23 1.44 16 21 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 22 H 0.06 1.38 5.45 -51.93 -0.28 1.09 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.27 8.37 8.73 -40.82 -0.36 8.02 16 25 H 0.07 1.12 7.76 -51.93 -0.40 0.72 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 261.09 15.07 3.93 3.93 Total: -1.00 -31.42 261.09 -5.40 -36.82 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.85 Total: -0.50 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.47 Total: -16.36 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.76 Total: -26.71 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.29 Total: -17.05 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.49 Total: 19.87 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.42 -5.40 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082580577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.562 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds