Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46669 * 2 1 4 4 C 1.50693 * 109.47132 * 119.99802 * 2 1 3 5 5 H 1.08001 * 120.00142 * 114.37269 * 4 2 1 6 6 C 1.37878 * 120.00132 * 294.37335 * 4 2 1 7 7 N 1.31514 * 120.00128 * 157.06889 * 6 4 2 8 8 Si 1.86803 * 120.00007 * 337.06945 * 6 4 2 9 9 H 1.48497 * 109.47254 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47016 * 300.00251 * 8 6 4 11 11 H 1.48498 * 109.47300 * 59.99800 * 8 6 4 12 12 C 1.50697 * 109.47075 * 240.00127 * 2 1 3 13 13 O 1.20764 * 119.99915 * 269.99581 * 12 2 1 14 14 C 1.50700 * 120.00433 * 90.00242 * 12 2 1 15 15 H 1.09002 * 109.51519 * 329.99513 * 14 12 2 16 16 C 1.53180 * 109.52196 * 209.87484 * 14 12 2 17 17 C 1.53184 * 109.03224 * 183.17315 * 16 14 12 18 18 C 1.53096 * 109.21404 * 56.87917 * 17 16 14 19 19 O 1.42898 * 109.41709 * 302.43096 * 18 17 16 20 20 C 1.42899 * 114.10323 * 61.15363 * 19 18 17 21 21 H 1.09001 * 109.47164 * 173.16783 * 1 2 3 22 22 H 1.08994 * 109.47265 * 293.16755 * 1 2 3 23 23 H 1.09002 * 109.47128 * 53.17506 * 1 2 3 24 24 H 0.96993 * 120.00140 * 354.92757 * 7 6 4 25 25 H 1.09003 * 109.53976 * 302.97501 * 16 14 12 26 26 H 1.08997 * 109.54777 * 63.24397 * 16 14 12 27 27 H 1.09004 * 109.47106 * 296.98294 * 17 16 14 28 28 H 1.08992 * 109.58170 * 176.85358 * 17 16 14 29 29 H 1.09002 * 109.48178 * 182.44337 * 18 17 16 30 30 H 1.09004 * 109.47687 * 62.40727 * 18 17 16 31 31 H 1.08998 * 109.48370 * 178.86255 * 20 19 18 32 32 H 1.08999 * 109.48690 * 58.82795 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8114 -0.9522 3.5405 8 14 1.4598 1.6524 2.6642 9 1 1.2418 1.9731 4.0977 10 1 2.6222 2.4244 2.1560 11 1 0.2477 2.0131 1.8859 12 6 2.0323 -0.7104 -1.2305 13 8 2.2337 -1.9007 -1.2005 14 6 2.2836 0.0646 -2.4983 15 1 1.6031 0.9148 -2.5463 16 6 2.0522 -0.8452 -3.7087 17 6 2.3870 -0.0705 -4.9871 18 6 3.8296 0.4358 -4.9062 19 8 3.9827 1.2503 -3.7421 20 6 3.7301 0.5656 -2.5135 21 1 -0.3633 -1.0204 -0.1223 22 1 -0.3633 0.4043 0.9447 23 1 -0.3633 0.6160 -0.8226 24 1 1.9133 -1.9114 3.4382 25 1 2.6968 -1.7211 -3.6349 26 1 1.0089 -1.1596 -3.7345 27 1 1.7087 0.7770 -5.0866 28 1 2.2791 -0.7266 -5.8507 29 1 4.0586 1.0245 -5.7946 30 1 4.5101 -0.4137 -4.8475 31 1 3.8873 1.2479 -1.6782 32 1 4.4093 -0.2821 -2.4234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082580577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -127.128249 kcal Electronic energy + Delta-G solvation = -14590.602241 eV Core-core repulsion = 12128.650775 eV Total energy + Delta-G solvation = -2461.951466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22939 -39.42602 -35.86353 -34.63523 -33.35291 -32.15898 -26.94064 -26.36634 -25.80415 -23.73614 -21.33511 -20.10740 -19.50415 -17.56404 -17.26902 -16.82092 -16.10537 -15.85957 -15.49526 -14.98441 -14.87255 -14.55164 -13.99847 -13.83422 -13.54461 -13.44462 -13.00277 -12.54911 -12.36107 -12.14984 -11.99255 -11.90327 -11.67519 -11.35502 -11.10303 -10.63463 -10.46385 -10.12813 -8.79264 -6.39573 1.12712 1.49648 1.57394 1.76102 2.52500 2.77228 2.99215 3.28056 3.66320 3.80648 3.95335 4.08300 4.18142 4.44736 4.47675 4.52103 4.61236 4.70868 4.72061 4.79459 4.87609 4.91867 5.00516 5.08362 5.17998 5.30070 5.46901 5.87401 6.01828 6.13475 6.52936 6.78660 7.37319 8.56025 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.008771 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.230336 B = 3191.727240 C = 3377.591299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.037 4.037 3 H 0.069 0.931 4 C -0.612 4.612 5 H 0.010 0.990 6 C -0.014 4.014 7 N -0.930 5.930 8 Si 1.079 2.921 9 H -0.291 1.291 10 H -0.255 1.255 11 H -0.234 1.234 12 C 0.379 3.621 13 O -0.500 6.500 14 C -0.168 4.168 15 H 0.123 0.877 16 C -0.113 4.113 17 C -0.144 4.144 18 C 0.048 3.952 19 O -0.385 6.385 20 C 0.080 3.920 21 H 0.028 0.972 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.250 0.750 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 7.789 -17.381 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.056 4.056 3 H 0.087 0.913 4 C -0.649 4.649 5 H 0.028 0.972 6 C -0.213 4.213 7 N -0.564 5.564 8 Si 0.897 3.103 9 H -0.217 1.217 10 H -0.180 1.180 11 H -0.158 1.158 12 C 0.256 3.744 13 O -0.375 6.375 14 C -0.187 4.187 15 H 0.141 0.859 16 C -0.150 4.150 17 C -0.182 4.182 18 C -0.028 4.028 19 O -0.304 6.304 20 C 0.003 3.997 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.331 8.505 -16.275 18.366 hybrid contribution 0.385 -2.491 -0.371 2.548 sum 0.054 6.014 -16.647 17.700 Atomic orbital electron populations 1.21923 0.94739 1.00357 1.02002 1.19620 0.95485 0.97957 0.92577 0.91329 1.21961 1.40590 1.09277 0.93107 0.97189 1.27430 0.92266 1.10153 0.91447 1.70976 1.46705 1.05578 1.33124 0.83674 0.79850 0.69933 0.76801 1.21696 1.17984 1.15770 1.25064 0.70382 0.88424 0.90513 1.90241 1.41339 1.20014 1.85945 1.22467 1.01112 1.01003 0.94114 0.85858 1.21526 1.02283 0.97583 0.93631 1.22161 0.97801 1.01081 0.97129 1.22894 0.95853 0.95635 0.88443 1.87931 1.89924 1.38362 1.14184 1.22291 0.92082 0.97373 0.87960 0.95276 0.92681 0.90462 0.94141 0.92846 0.91232 0.89817 0.88505 0.86045 0.93269 0.87612 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.90 71.98 0.64 -4.74 16 2 C -0.04 -1.68 2.16 -12.29 -0.03 -1.70 16 3 H 0.07 2.78 6.70 -2.38 -0.02 2.77 16 4 C -0.61 -35.87 8.57 25.60 0.22 -35.65 16 5 H 0.01 0.67 7.33 -2.91 -0.02 0.64 16 6 C -0.01 -0.84 5.20 84.65 0.44 -0.40 16 7 N -0.93 -59.33 13.70 21.45 0.29 -59.03 16 8 Si 1.08 47.43 26.44 68.60 1.81 49.24 16 9 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 11 H -0.23 -8.74 6.13 99.48 0.61 -8.13 16 12 C 0.38 16.01 5.27 29.10 0.15 16.16 16 13 O -0.50 -25.34 15.69 -1.46 -0.02 -25.36 16 14 C -0.17 -5.14 2.65 -11.45 -0.03 -5.17 16 15 H 0.12 3.21 8.12 -2.39 -0.02 3.19 16 16 C -0.11 -3.01 4.97 30.72 0.15 -2.86 16 17 C -0.14 -2.71 6.13 30.69 0.19 -2.52 16 18 C 0.05 0.94 6.84 72.01 0.49 1.44 16 19 O -0.39 -10.12 10.76 -148.98 -1.60 -11.72 16 20 C 0.08 2.38 6.11 72.01 0.44 2.82 16 21 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.05 2.29 5.45 -2.39 -0.01 2.28 16 23 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.25 16.50 8.73 -92.71 -0.81 15.69 16 25 H 0.05 1.62 7.76 -2.39 -0.02 1.60 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.23 261.09 4.10 -68.13 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.95 Total: 11.38 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 2.67 Total: -32.63 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.29 Total: -59.03 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.63 Total: -37.08 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.81 Total: 49.24 kcal Total: -72.23 4.10 -68.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082580577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.001 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds