Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47312 * 2 1 4 4 C 1.50698 * 109.47605 * 239.99646 * 2 1 3 5 5 H 1.08001 * 120.00203 * 275.08968 * 4 2 1 6 6 C 1.37877 * 120.00166 * 95.07789 * 4 2 1 7 7 N 1.31512 * 120.00522 * 184.91565 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.92049 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50706 * 109.47008 * 119.99799 * 2 1 3 13 13 O 1.20757 * 119.99701 * 94.99873 * 12 2 1 14 14 C 1.50700 * 120.00106 * 274.99593 * 12 2 1 15 15 H 1.09000 * 109.51989 * 35.12820 * 14 12 2 16 16 C 1.53179 * 109.52104 * 155.31530 * 14 12 2 17 17 C 1.53172 * 109.03622 * 176.89255 * 16 14 12 18 18 C 1.53101 * 109.16067 * 303.01706 * 17 16 14 19 19 O 1.42907 * 109.41373 * 57.61255 * 18 17 16 20 20 C 1.42905 * 114.09607 * 298.83991 * 19 18 17 21 21 H 1.08997 * 109.47194 * 55.04173 * 1 2 3 22 22 H 1.09005 * 109.47130 * 295.04772 * 1 2 3 23 23 H 1.08997 * 109.47279 * 175.04445 * 1 2 3 24 24 H 0.96999 * 120.00184 * 180.02562 * 7 6 4 25 25 H 1.09007 * 109.54266 * 296.75512 * 16 14 12 26 26 H 1.08994 * 109.54432 * 57.02212 * 16 14 12 27 27 H 1.08996 * 109.52579 * 183.11644 * 17 16 14 28 28 H 1.09002 * 109.58002 * 62.95486 * 17 16 14 29 29 H 1.09001 * 109.47856 * 297.62602 * 18 17 16 30 30 H 1.09003 * 109.48790 * 177.59592 * 18 17 16 31 31 H 1.09001 * 109.47769 * 301.18016 * 20 19 18 32 32 H 1.08989 * 109.47962 * 181.14090 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1342 -1.7857 -1.2294 6 6 2.3619 0.0121 -2.3575 7 7 2.7077 -0.6130 -3.4616 8 14 2.3172 1.8792 -2.3160 9 1 3.6030 2.3933 -1.7795 10 1 2.1112 2.4001 -3.6914 11 1 1.2021 2.3285 -1.4443 12 6 2.0323 -0.7104 1.2305 13 8 2.3194 -1.8821 1.1763 14 6 2.1763 0.0414 2.5286 15 1 1.3788 0.7798 2.6123 16 6 2.0914 -0.9407 3.7011 17 6 2.3165 -0.1771 5.0097 18 6 3.6686 0.5384 4.9478 19 8 3.6920 1.4129 3.8178 20 6 3.5337 0.7485 2.5625 21 1 -0.3633 0.5888 -0.8422 22 1 -0.3634 0.4351 0.9311 23 1 -0.3634 -1.0238 -0.0888 24 1 2.9398 -0.1046 -4.2544 25 1 1.1061 -1.4067 3.7158 26 1 2.8575 -1.7080 3.5902 27 1 2.3128 -0.8771 5.8452 28 1 1.5220 0.5567 5.1458 29 1 4.4660 -0.1988 4.8536 30 1 3.8153 1.1181 5.8592 31 1 4.3293 0.0140 2.4372 32 1 3.5830 1.4795 1.7556 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082580580.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = -104.062247 kcal Electronic energy + Delta-G solvation = -14616.698259 eV Core-core repulsion = 12155.747010 eV Total energy + Delta-G solvation = -2460.951249 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77802 -37.95945 -33.71614 -33.41008 -31.63691 -30.81782 -25.37938 -25.11038 -24.43646 -22.26658 -20.08993 -18.37326 -17.09709 -16.11806 -16.02309 -15.28100 -14.81613 -14.59322 -14.00294 -13.43571 -13.06934 -12.96853 -12.55866 -12.42374 -12.20552 -11.60800 -11.28824 -11.14254 -11.00923 -10.88625 -10.73794 -10.36643 -10.19107 -9.82844 -9.46684 -9.17969 -8.67647 -8.34364 -6.11565 -4.12275 2.85480 3.23222 3.30814 3.32636 3.91452 4.35224 4.67663 4.84983 4.91595 5.09115 5.12507 5.24618 5.34400 5.50085 5.68055 5.79461 5.83813 5.93391 6.00939 6.16553 6.22442 6.23616 6.39789 6.51118 6.54499 6.90599 7.17355 7.22349 7.57998 8.37534 8.57168 9.02069 9.48198 11.01444 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.040323 B = 0.009444 C = 0.008685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.222145 B = 2964.110758 C = 3223.218872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 H 0.052 0.948 4 C -0.509 4.509 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.869 3.131 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.373 3.627 13 O -0.450 6.450 14 C -0.180 4.180 15 H 0.099 0.901 16 C -0.110 4.110 17 C -0.154 4.154 18 C 0.058 3.942 19 O -0.381 6.381 20 C 0.076 3.924 21 H 0.054 0.946 22 H 0.027 0.973 23 H 0.051 0.949 24 H 0.265 0.735 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 4.441 14.617 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 H 0.070 0.930 4 C -0.547 4.547 5 H 0.103 0.897 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.696 3.304 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.246 3.754 13 O -0.322 6.322 14 C -0.199 4.199 15 H 0.117 0.883 16 C -0.148 4.148 17 C -0.192 4.192 18 C -0.019 4.019 19 O -0.299 6.299 20 C -0.001 4.001 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.645 4.022 14.393 14.959 hybrid contribution -0.098 0.811 -0.173 0.835 sum -0.743 4.832 14.221 15.038 Atomic orbital electron populations 1.21848 0.96429 1.01312 0.99198 1.19666 0.94391 0.97280 0.93924 0.93000 1.20858 1.43588 0.96150 0.94075 0.89680 1.25051 0.94491 0.98161 0.95245 1.69891 1.45788 1.35819 1.01668 0.86979 0.79244 0.86549 0.77638 1.19879 1.21215 1.18703 1.24892 0.72476 0.88535 0.89468 1.90251 1.37353 1.18458 1.86106 1.22555 1.00708 1.00025 0.96630 0.88296 1.21481 1.03060 0.97546 0.92710 1.22193 0.98714 1.00061 0.98228 1.22588 0.96228 0.93734 0.89365 1.87931 1.93478 1.34241 1.14273 1.22423 0.94336 0.97293 0.86062 0.92647 0.95377 0.92978 0.92486 0.91394 0.90867 0.90958 0.91110 0.93198 0.89115 0.92485 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.16 37.15 0.34 -2.32 16 2 C -0.03 -0.76 2.23 -92.93 -0.21 -0.97 16 3 H 0.05 1.14 5.29 -51.93 -0.27 0.87 16 4 C -0.51 -14.38 8.55 -34.44 -0.29 -14.68 16 5 H 0.09 2.73 7.51 -52.49 -0.39 2.33 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 8 Si 0.87 20.67 26.99 -169.99 -4.59 16.08 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.26 -5.82 6.82 56.52 0.39 -5.43 16 12 C 0.37 7.85 5.38 -29.03 -0.16 7.69 16 13 O -0.45 -10.85 15.61 6.00 0.09 -10.76 16 14 C -0.18 -2.95 2.65 -91.63 -0.24 -3.20 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.11 -1.59 4.90 -26.55 -0.13 -1.72 16 17 C -0.15 -1.76 6.14 -26.59 -0.16 -1.92 16 18 C 0.06 0.68 6.84 37.21 0.25 0.93 16 19 O -0.38 -5.66 10.77 -35.23 -0.38 -6.04 16 20 C 0.08 1.20 6.11 37.20 0.23 1.43 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.62 8.14 -51.94 -0.42 1.20 16 LS Contribution 264.22 15.07 3.98 3.98 Total: -1.00 -31.27 264.22 -5.46 -36.73 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.87 Total: -0.73 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.47 Total: -12.78 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.29 Total: -16.80 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.59 Total: 16.08 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.27 -5.46 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082580580.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.330 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds